PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022729450.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

C3H

Protein Properties

Length: 242aa MW: 26082.3 Da PI: 7.3912

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022729450.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27.8	4.4e-09	1	17	10	26
GGTS--TTTTT-SS-SS CS zf-CCCH 10 artGtCkyGdrCkFaHg 26 +r+G CkyG++C+F+H+ XP_022729450.1 1 MRNGSCKYGANCRFNHP 17 89**************9 PP
2	zf-CCCH	28	3.7e-09	129	155	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f++tG Ck+ ++Ck++H++ XP_022729450.1 129 PGQPECSYFLKTGDCKFKSNCKYHHPK 155 5789*********************96 PP
3	zf-CCCH	36.4	9e-12	178	201	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C++++r+G+Ck+G+ CkF H++ XP_022729450.1 178 IICSHYSRYGICKFGPACKFDHSM 201 58********************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence
MRNGSCKYGA NCRFNHPDPT AAGACDPPSA YSNGGSVSPQ AAPQVNMTSW SSPRTLNETA 60 AYMPIVFSPT QGVPPPNPEW NGYQTTVYPP SERSLHPTPA FVISNPSTDT TVYAPLPPQM 120 VVDEFPFRPG QPECSYFLKT GDCKFKSNCK YHHPKDRVPK PAPCALSDKG LPLRPDQIIC 180 SHYSRYGICK FGPACKFDHS MQAVPSEVSG LDQPPPISHS TATEQTVIAG SNGTDAAVQQ 240 PV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	2e-85	C3H family protein