PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022730359.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

C2H2

Protein Properties

Length: 513aa MW: 56342.4 Da PI: 9.0025

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022730359.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14	0.00015	61	81	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C+k F r nL+ H r H XP_022730359.1 61 CEICNKGFQRDQNLQLHRRGH 81 *******************88 PP
2	zf-C2H2	11.8	0.00073	135	157	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H + + XP_022730359.1 135 WKCEKCSKKYAVQSDWKAHSKIC 157 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 513 aa Download sequence
MMSQDGLSIP STIPGLAQEP NPNPTANPVK KKRNLPGTPD PDAEVIALSP KSLMATNRFL 60 CEICNKGFQR DQNLQLHRRG HNLPWKLKQR TNKEVRKKVY ICPEKTCVHH DPSRALGDLT 120 GIKKHFSRKH GEKKWKCEKC SKKYAVQSDW KAHSKICGTR EYRCDCGTLF SRKDSFITHR 180 AFCDALAEES DRFTSVSTTM NPATFRHDLI NGANNNAQPT GMHQFSSGFK PEFAGSELVD 240 NLNSNGQKPR LQLWLDPANS PLNPVGVPSD ANASLAPKSA CLTDLGIAPM NMFGSLLQTQ 300 WLSKYPEASF PVANLNMSAL PRGPKEEEEN KEDLSESITS LYSNNTRNNL QQSHTHMSAT 360 ALLQKAAQMG PTRSSPAFNN SGFGLMCSSA TTISSSNAYY QNKNEVYKNI NELVSSLSST 420 QAAAIMKDGS TLDDLNSSSF VSNTTKNNAD NLMMQGNGKQ GGQTVLSKLN SNSNEVEASL 480 TRDFLGVGVE SSKPFLQQEL AKFASMGSVH PWS

Sequence ? help Back to Top

Protein Sequence Length: 513 aa Download sequence

MMSQDGLSIP STIPGLAQEP NPNPTANPVK KKRNLPGTPD PDAEVIALSP KSLMATNRFL  60
CEICNKGFQR DQNLQLHRRG HNLPWKLKQR TNKEVRKKVY ICPEKTCVHH DPSRALGDLT  120
GIKKHFSRKH GEKKWKCEKC SKKYAVQSDW KAHSKICGTR EYRCDCGTLF SRKDSFITHR  180
AFCDALAEES DRFTSVSTTM NPATFRHDLI NGANNNAQPT GMHQFSSGFK PEFAGSELVD  240
NLNSNGQKPR LQLWLDPANS PLNPVGVPSD ANASLAPKSA CLTDLGIAPM NMFGSLLQTQ  300
WLSKYPEASF PVANLNMSAL PRGPKEEEEN KEDLSESITS LYSNNTRNNL QQSHTHMSAT  360
ALLQKAAQMG PTRSSPAFNN SGFGLMCSSA TTISSSNAYY QNKNEVYKNI NELVSSLSST  420
QAAAIMKDGS TLDDLNSSSF VSNTTKNNAD NLMMQGNGKQ GGQTVLSKLN SNSNEVEASL  480
TRDFLGVGVE SSKPFLQQEL AKFASMGSVH PWS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	86	98	KLKQRTNKEVRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45260.1	1e-103	C2H2 family protein