PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022731819.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

RAV

Protein Properties

Length: 360aa MW: 41293.2 Da PI: 8.1195

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022731819.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	31.4	4.7e-10	48	94	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +kGV ++g W A+I+ + +r++lg+f +++eAa a++ a+ kl++ XP_022731819.1 48 FKGVV-PQQNGNWGAQIYA------NhQRIWLGTFKSEKEAAMAYDSAAVKLRN 94 78886.566899**999......44******99**********997 PP
2	B3	87.5	1.1e-27	170	269	1	84
EEEE-..-HHHHTT-EE--HHH.HTT................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh................ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 f+k+ltpsdv+k++rlv+pkk+a+++ gg e+++l+++d+ r+W+++++y+++s+++v+t+GW++Fvk+++L+e+D+ XP_022731819.1 170 FQKELTPSDVGKLNRLVIPKKYAAKYfpyicendqqslvgggGGGGLEDIELVFYDKLMRTWKFRYCYWRSSQSFVFTRGWNRFVKEKKLRERDT 264 99***************************9888877777733334899***************************************** PP EEEEE CS B3 80 vvFkl 84 ++F+ XP_022731819.1 265 IIFYT 269 *94 PP

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence
MEDDESIMVL NAKLNVAAAE TSDSGNSNYT LRANKRSRHE NGASLARFKG VVPQQNGNWG 60 AQIYANHQRI WLGTFKSEKE AAMAYDSAAV KLRNGDSHRN FSWTDHNIQE PNFQNLYSAE 120 DVLNMIRDGS YQAKFADFVK TLSERDGKLG TKHNKNLVHG DIQFTCVQLF QKELTPSDVG 180 KLNRLVIPKK YAAKYFPYIC ENDQQSLVGG GGGGGLEDIE LVFYDKLMRT WKFRYCYWRS 240 SQSFVFTRGW NRFVKEKKLR ERDTIIFYTC EWPGGEKRGQ NFFLIDVNYN GEQNCMNEEK 300 KASNRLESSG HQDNLQVELE LNLGKNFYCR VDNEDKPING LESSHNVEGK RISLFGVHIN

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence

MEDDESIMVL NAKLNVAAAE TSDSGNSNYT LRANKRSRHE NGASLARFKG VVPQQNGNWG  60
AQIYANHQRI WLGTFKSEKE AAMAYDSAAV KLRNGDSHRN FSWTDHNIQE PNFQNLYSAE  120
DVLNMIRDGS YQAKFADFVK TLSERDGKLG TKHNKNLVHG DIQFTCVQLF QKELTPSDVG  180
KLNRLVIPKK YAAKYFPYIC ENDQQSLVGG GGGGGLEDIE LVFYDKLMRT WKFRYCYWRS  240
SQSFVFTRGW NRFVKEKKLR ERDTIIFYTC EWPGGEKRGQ NFFLIDVNYN GEQNCMNEEK  300
KASNRLESSG HQDNLQVELE LNLGKNFYCR VDNEDKPING LESSHNVEGK RISLFGVHIN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51120.1	1e-107	RAV family protein