PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022733561.1
Organism
Durio zibethinus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
Family MIKC_MADS
Protein Properties Length: 235aa    MW: 26968.2 Da    PI: 9.438
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022733561.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.32e-282473251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    rien + rqvtfskRr g+lKKA+ELSvLCdaeva+iifs++gkl e++s
  XP_022733561.1 24 RIENATSRQVTFSKRRSGLLKKAFELSVLCDAEVALIIFSPRGKLCEFAS 73
                    8***********************************************86 PP
2K-box88.51.3e-2983179197
           K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                     y+++++++ +e+++++l++e+a++ k+ie Lq   R+llGe+L+s++l+eLqq+eqqLe+s++++R++K+++++eqi++lq+kek l  en +L 
  XP_022733561.1  83 YKRHTKTKPTEQNMQHLKTEAANMVKKIEILQDLRRKLLGEGLGSCTLEELQQIEQQLERSVSNVRARKTQVFKEQIDRLQEKEKILAAENAKLY 177
                     5667777899************************************************************************************9 PP

           K-box  96 kk 97 
                     +k
  XP_022733561.1 178 EK 179
                     88 PP
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    
MMIASAFLLL EGAEMVRGKT QMRRIENATS RQVTFSKRRS GLLKKAFELS VLCDAEVALI  60
IFSPRGKLCE FASSSMQETI ERYKRHTKTK PTEQNMQHLK TEAANMVKKI EILQDLRRKL  120
LGEGLGSCTL EELQQIEQQL ERSVSNVRAR KTQVFKEQID RLQEKEKILA AENAKLYEKC  180
VMQPWKGSKE QKENIPYNES SPNSDVETDL FIGPPEGRTK SNLQRANPMP CIYEL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.12e-80MIKC_MADS family protein