PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022733864.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

RAV

Protein Properties

Length: 359aa MW: 40283.6 Da PI: 9.2021

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022733864.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	41	4.7e-13	64	112	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ ++r++lg+f ++eAak ++ a++k++g XP_022733864.1 64 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAAKVYDIAAQKFRG 112 89**9888.8*****3.....5******99***********98 PP
2	B3	100.1	1.3e-31	193	292	1	95
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k+ tpsdv+k++rlv+pk++ae++ g + +++ l +ed +g++W+++++y+++s++yvltkGW++Fvk+++Lk+gD+v F+++ e+ XP_022733864.1 193 FEKAVTPSDVGKLNRLVIPKQHAEKYfplqsGTASSKGVLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFQRSTGPEK 287 89*************************9966677999***********************************************8766666 PP ..EEE CS B3 91 elvvk 95 +l++ XP_022733864.1 288 QLYID 292 66665 PP

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence
MDGSCMDETT TSDSISISIS PSNISPLPPV TKSPDSLCRV GSGTSVIVDS EAGVEAESRK 60 LPSSKYKGVV PQPNGRWGAQ IYEKHQRVWL GTFNEEDEAA KVYDIAAQKF RGRDAVTNFK 120 HLQETDEDEI ERAFLNSHSK VEIVDMLRKH TYNDELEQSR KSYGFNGNGK RVVRNDVGFG 180 SFGLKLKARE QLFEKAVTPS DVGKLNRLVI PKQHAEKYFP LQSGTASSKG VLLNFEDVTG 240 KVWRFRYSYW NSSQSYVLTK GWSRFVKEKN LKAGDIVSFQ RSTGPEKQLY IDWKLRTGLA 300 LALENPVGPV EMVRLFGVNI FKIPGSENVG LGGCNGKRTR EMELWELECS KKQRVIDAL

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence

MDGSCMDETT TSDSISISIS PSNISPLPPV TKSPDSLCRV GSGTSVIVDS EAGVEAESRK  60
LPSSKYKGVV PQPNGRWGAQ IYEKHQRVWL GTFNEEDEAA KVYDIAAQKF RGRDAVTNFK  120
HLQETDEDEI ERAFLNSHSK VEIVDMLRKH TYNDELEQSR KSYGFNGNGK RVVRNDVGFG  180
SFGLKLKARE QLFEKAVTPS DVGKLNRLVI PKQHAEKYFP LQSGTASSKG VLLNFEDVTG  240
KVWRFRYSYW NSSQSYVLTK GWSRFVKEKN LKAGDIVSFQ RSTGPEKQLY IDWKLRTGLA  300
LALENPVGPV EMVRLFGVNI FKIPGSENVG LGGCNGKRTR EMELWELECS KKQRVIDAL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25560.1	1e-148	RAV family protein