PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022737036.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

C3H

Protein Properties

Length: 473aa MW: 52218.3 Da PI: 5.1592

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022737036.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	38.6	1.8e-12	133	155	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C ++++tG Ck+G++CkF+H+ XP_022737036.1 133 EDCAYYMKTGLCKFGSNCKFNHP 155 89********************9 PP
2	zf-CCCH	30.8	5.1e-10	179	203	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + +C++++rtG Ck+G C+++H++ XP_022737036.1 179 QTECKYYLRTGGCKFGKACRYNHSR 203 568********************95 PP
3	zf-CCCH	39.4	9.7e-13	224	248	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++r+G CkyG++C+F+H+ XP_022737036.1 224 GEKECPYYMRNGSCKYGANCRFNHP 248 6789********************9 PP
4	zf-CCCH	28.6	2.4e-09	360	386	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f++tG Ck+ ++Ck++H++ XP_022737036.1 360 PGQPECSYFMKTGDCKFKSNCKYHHPK 386 5789*********************96 PP
5	zf-CCCH	36	1.2e-11	407	431	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++r+G+Ck+G+ CkF H+ XP_022737036.1 407 DQSICSHYSRYGICKFGPACKFDHS 431 6789********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 473 aa Download sequence
MSQSEEIPIS NSIPTGSALH LGLHSTDPDP DPAPNPDVSP SDLNHSAEEN EHGESNLEQQ 60 LQNLDLNKEE GDEEEEAERK DDVERQRDND AGTDAAGDSE EEEDEKSENE NGSENLKINK 120 VRKSHYPVRP EAEDCAYYMK TGLCKFGSNC KFNHPVPRKN QVVKDNVKEK DESTEKPSQT 180 ECKYYLRTGG CKFGKACRYN HSRAKSSVGP ILELNFLGLP IRQGEKECPY YMRNGSCKYG 240 ANCRFNHPDP TAARACDPSS GYGNGGSVSS QAASQVHMTS WSSPRTLNES AAYMPIMFAP 300 TQGVPPPNPE WNGYQTTVYP PPERGFHPTP AYVMSNPSTE ATVYTHHQPQ MVVDEFPVRP 360 GQPECSYFMK TGDCKFKSNC KYHHPKDRVA KSAPCAFSDK GLPLRPDQSI CSHYSRYGIC 420 KFGPACKFDH SIQADPSTVS GLDQPPTFSN SAATEQAGIA ETDGTDTAVQ HYV

Sequence ? help Back to Top

Protein Sequence Length: 473 aa Download sequence

MSQSEEIPIS NSIPTGSALH LGLHSTDPDP DPAPNPDVSP SDLNHSAEEN EHGESNLEQQ  60
LQNLDLNKEE GDEEEEAERK DDVERQRDND AGTDAAGDSE EEEDEKSENE NGSENLKINK  120
VRKSHYPVRP EAEDCAYYMK TGLCKFGSNC KFNHPVPRKN QVVKDNVKEK DESTEKPSQT  180
ECKYYLRTGG CKFGKACRYN HSRAKSSVGP ILELNFLGLP IRQGEKECPY YMRNGSCKYG  240
ANCRFNHPDP TAARACDPSS GYGNGGSVSS QAASQVHMTS WSSPRTLNES AAYMPIMFAP  300
TQGVPPPNPE WNGYQTTVYP PPERGFHPTP AYVMSNPSTE ATVYTHHQPQ MVVDEFPVRP  360
GQPECSYFMK TGDCKFKSNC KYHHPKDRVA KSAPCAFSDK GLPLRPDQSI CSHYSRYGIC  420
KFGPACKFDH SIQADPSTVS GLDQPPTFSN SAATEQAGIA ETDGTDTAVQ HYV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	1e-133	C3H family protein