PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022738208.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

HD-ZIP

Protein Properties

Length: 331aa MW: 37749.5 Da PI: 4.5424

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022738208.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.6	2.5e-19	93	146	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t +q++ Le+ Fe ++++ e++ +LAk+lgL+ rqV +WFqNrRa++k XP_022738208.1 93 KKRRLTVDQVRFLEKSFEVENKLEPERKIQLAKELGLQPRQVAIWFQNRRARWK 146 56689************************************************9 PP
2	HD-ZIP_I/II	129.1	1.8e-41	92	182	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrl+ +qv++LE+sFe e+kLeperK +la+eLglqprqva+WFqnrRAR+ktkqlEkdy++L+++y++l+++ ++L ke+++L+ee+ XP_022738208.1 92 EKKRRLTVDQVRFLEKSFEVENKLEPERKIQLAKELGLQPRQVAIWFQNRRARWKTKQLEKDYDTLQASYNSLRADYDNLLKEKDKLKEEV 182 69**************************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence
MAGRRVCPTN TSTDGGSNNL SLLLRSQRVA SSSEPLDPLF IPGSSPSFLG TRSMVSFEDF 60 HRTNRANRSF FRTFDQEDNG DEDLDEYFHQ PEKKRRLTVD QVRFLEKSFE VENKLEPERK 120 IQLAKELGLQ PRQVAIWFQN RRARWKTKQL EKDYDTLQAS YNSLRADYDN LLKEKDKLKE 180 EVLQHTDKLL MKEKEKGNSE VSDVNTLSQE PPQKPVVAEA ASEGEESKVS LVACKQEDIS 240 SAKSDIFDSD SPHYTDGVHS SLLEAADSSY PFEPDQSDSS QDEEDNLSKG LLHPPSYIFP 300 KLEDDDYSDP PASSCNFGFP VEDHAFWSWA Y

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	141	149	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	5e-40	HD-ZIP family protein