PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022738383.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

RAV

Protein Properties

Length: 294aa MW: 33578.1 Da PI: 10.1123

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022738383.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	32.8	1.8e-10	24	70	2	54
AP2 2 gykGVrwdkkrgr.WvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 +++GV+ + ++r W A+I +k ++lg++ +eeAa a+++a++kl XP_022738383.1 24 RFRGVH--PLNNRkWGARISIK-----YKAYWLGTYQMEEEAAIAYDRAALKLQ 70 589995..444444**9993.....5*********************996 PP
2	B3	62	9.8e-20	142	236	1	85
EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f k+lt+ dv + + +p+++a ++ + +s++lt++d+ rsW+++++y+ + +++++t+GW++Fv n+L+ gD+++F+ XP_022738383.1 142 FHKKLTQTDVIHIKGFHIPRDYALQYlpslgnssdggqM--GSGSIDLTFYDKYCRSWSFRYSYCSSTKTFLFTRGWRSFVAMNNLNPGDTIMFY 234 89**************************999987432..3489***********************************************9 PP E- CS B3 84 ld 85 XP_022738383.1 235 GC 236 43 PP

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence
MVGSSNSNKN IIRSRCSSDR KSARFRGVHP LNNRKWGARI SIKYKAYWLG TYQMEEEAAI 60 AYDRAALKLQ RNESPLNFPW KIYTTQEKLF QSWYSIQEIL TMIRDKTYSS TFTSFLARQS 120 LASRSIAGGQ INAKGTSYQL LFHKKLTQTD VIHIKGFHIP RDYALQYLPS LGNSSDGGQM 180 GSGSIDLTFY DKYCRSWSFR YSYCSSTKTF LFTRGWRSFV AMNNLNPGDT IMFYGCEHVE 240 AGQKRKSYML DVHRNVAESY IVGRYAEEGI GAYVDGIRGV EKNNGVKLFG VKIG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50680.1	1e-51	RAV family protein