PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022740949.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

C3H

Protein Properties

Length: 469aa MW: 53011.7 Da PI: 6.0617

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022740949.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	38.8	1.5e-12	92	114	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C+ff++tGtCk+G +CkF+H+ XP_022740949.1 92 EDCSFFLKTGTCKFGLNCKFNHP 114 78********************9 PP
2	zf-CCCH	21.8	3.4e-07	135	158	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + +C+++++tG CkyG+ C++ H+ XP_022740949.1 135 RIECKYYRATGGCKYGNACRYRHC 158 568******************997 PP
3	zf-CCCH	26.1	1.5e-08	197	217	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C++++ +G CkyG Ck++H XP_022740949.1 197 ECKYYLTSGGCKYGTACKYSH 217 7******************** PP
4	zf-CCCH	37	5.7e-12	247	269	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++++rtG C yG++C+F+H+ XP_022740949.1 247 KECPYYMRTGSCGYGASCRFNHP 269 68********************9 PP
5	zf-CCCH	30.1	8.5e-10	384	410	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f++tG+Ck+ CkF+H++ XP_022740949.1 384 PGEPECPYFMKTGYCKFKTACKFHHPK 410 5799*********************96 PP
6	zf-CCCH	20.4	8.8e-07	431	456	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C ++ ++G CkyG +C F+H++ XP_022740949.1 431 DRKICWNYEKFGVCKYGRSCYFHHPE 456 7899********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 469 aa Download sequence
MGSCEEYSSS LPETPSQTQP ESPSRFNLDT LLSDLYPGTE KEEESLVEGL KSVSLEENDR 60 NSYGDNNNGS ENLQAEWEDG ENYQYPLRPC AEDCSFFLKT GTCKFGLNCK FNHPVGRGFQ 120 DEENYKGWTA EQTGRIECKY YRATGGCKYG NACRYRHCNE DYVLAPLEAN SFGLPVQVVI 180 KENREKDGFK EQTGQIECKY YLTSGGCKYG TACKYSHFKE KSRYLEKSEL PLPELNFLGL 240 PIRMLEKECP YYMRTGSCGY GASCRFNHPD PTSAEGSNTF SSDPSGFGGH SSENYNGESD 300 ALPSSPKPTA ASSSLNMMSD KHVPYLNHNS SSAHVTHLNS EWNGHEEKTS HPYSSRSIHS 360 AMKTEDISKL HQEPIQVDEF PERPGEPECP YFMKTGYCKF KTACKFHHPK IRSSKPTAFI 420 LSSAGLPLRP DRKICWNYEK FGVCKYGRSC YFHHPENLFS SDFWVDSIP

Sequence ? help Back to Top

Protein Sequence Length: 469 aa Download sequence

MGSCEEYSSS LPETPSQTQP ESPSRFNLDT LLSDLYPGTE KEEESLVEGL KSVSLEENDR  60
NSYGDNNNGS ENLQAEWEDG ENYQYPLRPC AEDCSFFLKT GTCKFGLNCK FNHPVGRGFQ  120
DEENYKGWTA EQTGRIECKY YRATGGCKYG NACRYRHCNE DYVLAPLEAN SFGLPVQVVI  180
KENREKDGFK EQTGQIECKY YLTSGGCKYG TACKYSHFKE KSRYLEKSEL PLPELNFLGL  240
PIRMLEKECP YYMRTGSCGY GASCRFNHPD PTSAEGSNTF SSDPSGFGGH SSENYNGESD  300
ALPSSPKPTA ASSSLNMMSD KHVPYLNHNS SSAHVTHLNS EWNGHEEKTS HPYSSRSIHS  360
AMKTEDISKL HQEPIQVDEF PERPGEPECP YFMKTGYCKF KTACKFHHPK IRSSKPTAFI  420
LSSAGLPLRP DRKICWNYEK FGVCKYGRSC YFHHPENLFS SDFWVDSIP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63260.1	2e-71	C3H family protein