PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022740950.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

C3H

Protein Properties

Length: 403aa MW: 45334.8 Da PI: 5.5569

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022740950.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	39.1	1.3e-12	92	114	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C+ff++tGtCk+G +CkF+H+ XP_022740950.1 92 EDCSFFLKTGTCKFGLNCKFNHP 114 78********************9 PP
2	zf-CCCH	22	2.8e-07	135	158	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + +C+++++tG CkyG+ C++ H+ XP_022740950.1 135 RIECKYYRATGGCKYGNACRYRHC 158 568******************997 PP
3	zf-CCCH	37.2	4.8e-12	181	203	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++++rtG C yG++C+F+H+ XP_022740950.1 181 KECPYYMRTGSCGYGASCRFNHP 203 68********************9 PP
4	zf-CCCH	30.3	7e-10	318	344	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f++tG+Ck+ CkF+H++ XP_022740950.1 318 PGEPECPYFMKTGYCKFKTACKFHHPK 344 5799*********************96 PP
5	zf-CCCH	20.7	7.3e-07	365	390	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C ++ ++G CkyG +C F+H++ XP_022740950.1 365 DRKICWNYEKFGVCKYGRSCYFHHPE 390 7899********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence
MGSCEEYSSS LPETPSQTQP ESPSRFNLDT LLSDLYPGTE KEEESLVEGL KSVSLEENDR 60 NSYGDNNNGS ENLQAEWEDG ENYQYPLRPC AEDCSFFLKT GTCKFGLNCK FNHPVGRGFQ 120 DEENYKGWTA EQTGRIECKY YRATGGCKYG NACRYRHCNE DYVLAPLEAN SFGLPVQVLE 180 KECPYYMRTG SCGYGASCRF NHPDPTSAEG SNTFSSDPSG FGGHSSENYN GESDALPSSP 240 KPTAASSSLN MMSDKHVPYL NHNSSSAHVT HLNSEWNGHE EKTSHPYSSR SIHSAMKTED 300 ISKLHQEPIQ VDEFPERPGE PECPYFMKTG YCKFKTACKF HHPKIRSSKP TAFILSSAGL 360 PLRPDRKICW NYEKFGVCKY GRSCYFHHPE NLFSSDFWVD SIP

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence

MGSCEEYSSS LPETPSQTQP ESPSRFNLDT LLSDLYPGTE KEEESLVEGL KSVSLEENDR  60
NSYGDNNNGS ENLQAEWEDG ENYQYPLRPC AEDCSFFLKT GTCKFGLNCK FNHPVGRGFQ  120
DEENYKGWTA EQTGRIECKY YRATGGCKYG NACRYRHCNE DYVLAPLEAN SFGLPVQVLE  180
KECPYYMRTG SCGYGASCRF NHPDPTSAEG SNTFSSDPSG FGGHSSENYN GESDALPSSP  240
KPTAASSSLN MMSDKHVPYL NHNSSSAHVT HLNSEWNGHE EKTSHPYSSR SIHSAMKTED  300
ISKLHQEPIQ VDEFPERPGE PECPYFMKTG YCKFKTACKF HHPKIRSSKP TAFILSSAGL  360
PLRPDRKICW NYEKFGVCKY GRSCYFHHPE NLFSSDFWVD SIP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	1e-79	C3H family protein