PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022741058.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

C3H

Protein Properties

Length: 460aa MW: 48733.7 Da PI: 7.7699

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022741058.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	38.1	2.6e-12	43	68	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C +++rtG+C yG+rC+F+H++ XP_022741058.1 43 DEADCIYYLRTGFCGYGSRCRFNHPR 68 6799********************96 PP
2	zf-CCCH	36.2	1e-11	90	114	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++r+G Ck+G++Ck++H++ XP_022741058.1 90 QPVCQYYMRMGRCKFGASCKYHHPK 114 689********************96 PP
3	zf-CCCH	37	5.7e-12	135	159	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C+++a+tG+Ck+G +CkF+H+ XP_022741058.1 135 GEKECSYYAKTGQCKFGVTCKFHHP 159 7899********************8 PP
4	zf-CCCH	42.3	1.3e-13	284	310	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG CkyG++C+F+H+p XP_022741058.1 284 PGQPECQYYMKTGDCKYGSSCRFHHPP 310 5789*********************97 PP
5	zf-CCCH	32.1	2e-10	332	356	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++C ++++ G Ck+G+ C+F H++ XP_022741058.1 332 APPCTHYSQHGVCKFGAACRFDHSM 356 689********************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 460 aa Download sequence
MERDPESDPQ PEWTAPGPET GLEEPVWLLG LGGGSESYPE RPDEADCIYY LRTGFCGYGS 60 RCRFNHPRDR AAVMGAGRDG VGEYPERVGQ PVCQYYMRMG RCKFGASCKY HHPKQGGGSV 120 SPMSLNYYGY PLRPGEKECS YYAKTGQCKF GVTCKFHHPS PSPAPQVAPV PTPVPAPPLY 180 SAVQSPSGPS SQQYGLVMAR PPLMPGPYVQ GLYGPLLLSP GVPSWNPYPA PVSPGTQPTV 240 GSSSIFRVTP LSPSAPAYTG SYQSVPSVGP SSSIQKEQLF PERPGQPECQ YYMKTGDCKY 300 GSSCRFHHPP EVIAPKADVI LSPLRFPLRP GAPPCTHYSQ HGVCKFGAAC RFDHSMGTLG 360 YGPSVSSLTD MPFVPFPVGS TYGTLAPTSL SSELGPELLS GSSKDPAPAI TSSSVSASSE 420 SVGSVFSKVA PVPHSSTQQS SRSSAPSTGS GSSSEAHTSS

Sequence ? help Back to Top

Protein Sequence Length: 460 aa Download sequence

MERDPESDPQ PEWTAPGPET GLEEPVWLLG LGGGSESYPE RPDEADCIYY LRTGFCGYGS  60
RCRFNHPRDR AAVMGAGRDG VGEYPERVGQ PVCQYYMRMG RCKFGASCKY HHPKQGGGSV  120
SPMSLNYYGY PLRPGEKECS YYAKTGQCKF GVTCKFHHPS PSPAPQVAPV PTPVPAPPLY  180
SAVQSPSGPS SQQYGLVMAR PPLMPGPYVQ GLYGPLLLSP GVPSWNPYPA PVSPGTQPTV  240
GSSSIFRVTP LSPSAPAYTG SYQSVPSVGP SSSIQKEQLF PERPGQPECQ YYMKTGDCKY  300
GSSCRFHHPP EVIAPKADVI LSPLRFPLRP GAPPCTHYSQ HGVCKFGAAC RFDHSMGTLG  360
YGPSVSSLTD MPFVPFPVGS TYGTLAPTSL SSELGPELLS GSSKDPAPAI TSSSVSASSE  420
SVGSVFSKVA PVPHSSTQQS SRSSAPSTGS GSSSEAHTSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06410.1	1e-144	C3H family protein