PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022741076.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

C3H

Protein Properties

Length: 387aa MW: 40562.7 Da PI: 8.7211

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022741076.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.5	8.3e-12	17	41	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++r+G Ck+G++Ck++H++ XP_022741076.1 17 QPVCQYYMRMGRCKFGASCKYHHPK 41 689********************96 PP
2	zf-CCCH	37.3	4.6e-12	62	86	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C+++a+tG+Ck+G +CkF+H+ XP_022741076.1 62 GEKECSYYAKTGQCKFGVTCKFHHP 86 7899********************8 PP
3	zf-CCCH	42.6	1e-13	211	237	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG CkyG++C+F+H+p XP_022741076.1 211 PGQPECQYYMKTGDCKYGSSCRFHHPP 237 5789*********************97 PP
4	zf-CCCH	32.3	1.6e-10	259	283	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++C ++++ G Ck+G+ C+F H++ XP_022741076.1 259 APPCTHYSQHGVCKFGAACRFDHSM 283 689********************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence
MGAGRDGVGE YPERVGQPVC QYYMRMGRCK FGASCKYHHP KQGGGSVSPM SLNYYGYPLR 60 PGEKECSYYA KTGQCKFGVT CKFHHPSPSP APQVAPVPTP VPAPPLYSAV QSPSGPSSQQ 120 YGLVMARPPL MPGPYVQGLY GPLLLSPGVP SWNPYPAPVS PGTQPTVGSS SIFRVTPLSP 180 SAPAYTGSYQ SVPSVGPSSS IQKEQLFPER PGQPECQYYM KTGDCKYGSS CRFHHPPEVI 240 APKADVILSP LRFPLRPGAP PCTHYSQHGV CKFGAACRFD HSMGTLGYGP SVSSLTDMPF 300 VPFPVGSTYG TLAPTSLSSE LGPELLSGSS KDPAPAITSS SVSASSESVG SVFSKVAPVP 360 HSSTQQSSRS SAPSTGSGSS SEAHTSS

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence

MGAGRDGVGE YPERVGQPVC QYYMRMGRCK FGASCKYHHP KQGGGSVSPM SLNYYGYPLR  60
PGEKECSYYA KTGQCKFGVT CKFHHPSPSP APQVAPVPTP VPAPPLYSAV QSPSGPSSQQ  120
YGLVMARPPL MPGPYVQGLY GPLLLSPGVP SWNPYPAPVS PGTQPTVGSS SIFRVTPLSP  180
SAPAYTGSYQ SVPSVGPSSS IQKEQLFPER PGQPECQYYM KTGDCKYGSS CRFHHPPEVI  240
APKADVILSP LRFPLRPGAP PCTHYSQHGV CKFGAACRFD HSMGTLGYGP SVSSLTDMPF  300
VPFPVGSTYG TLAPTSLSSE LGPELLSGSS KDPAPAITSS SVSASSESVG SVFSKVAPVP  360
HSSTQQSSRS SAPSTGSGSS SEAHTSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18550.1	1e-108	C3H family protein