PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022741551.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

HD-ZIP

Protein Properties

Length: 211aa MW: 24301.6 Da PI: 7.5676

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022741551.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.9	2e-19	54	108	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 k++++++eq++ Le F +++++ e++ +LA++lgL+ rqV vWFqNrRa++k+ XP_022741551.1 54 KKRKLSQEQVNLLELNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKN 108 45699************************************************95 PP
2	HD-ZIP_I/II	116.8	1.2e-37	54	144	2	92
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kkr+ls+eqv+lLE +F +e+kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k+lE++y+++k+a++ ++ e++rLe+ev +L+e+l XP_022741551.1 54 KKRKLSQEQVNLLELNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSKMKTAHEGVVLEKCRLESEVLKLKEQLC 144 9***************************************************************************************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence
MTTQMNELHD QMALISQMYP GVYSQIAPQQ AGESKPRRRR KKNKGGENSL SGAKKRKLSQ 60 EQVNLLELNF GNEHKLESER KDRLASELGL DPRQVAVWFQ NRRARWKNKK LEEEYSKMKT 120 AHEGVVLEKC RLESEVLKLK EQLCEATKEI QRLGERVDGV SSNSPSSSVL SMEAMDPPFL 180 GEFGVEGYDQ DVFYIGENSY IHGMEWMNLY I

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	37	56	RRRRKKNKGGENSLSGAKKR
2	37	57	RRRRKKNKGGENSLSGAKKRK
3	38	57	RRRRKKNKGGENSLSGAKKR
4	38	58	RRRRKKNKGGENSLSGAKKRK
5	39	59	RRRRKKNKGGENSLSGAKKRK
6	40	60	RRRRKKNKGGENSLSGAKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	2e-75	HD-ZIP family protein