PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022741552.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

HD-ZIP

Protein Properties

Length: 210aa MW: 24230.5 Da PI: 7.5676

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022741552.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.9	2e-19	53	107	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 k++++++eq++ Le F +++++ e++ +LA++lgL+ rqV vWFqNrRa++k+ XP_022741552.1 53 KKRKLSQEQVNLLELNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKN 107 45699************************************************95 PP
2	HD-ZIP_I/II	116.9	1.2e-37	53	143	2	92
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kkr+ls+eqv+lLE +F +e+kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k+lE++y+++k+a++ ++ e++rLe+ev +L+e+l XP_022741552.1 53 KKRKLSQEQVNLLELNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSKMKTAHEGVVLEKCRLESEVLKLKEQLC 143 9***************************************************************************************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence
MTTQMNELHD QMALISQMYP GVYSQIAPQQ GESKPRRRRK KNKGGENSLS GAKKRKLSQE 60 QVNLLELNFG NEHKLESERK DRLASELGLD PRQVAVWFQN RRARWKNKKL EEEYSKMKTA 120 HEGVVLEKCR LESEVLKLKE QLCEATKEIQ RLGERVDGVS SNSPSSSVLS MEAMDPPFLG 180 EFGVEGYDQD VFYIGENSYI HGMEWMNLYI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	36	55	RRRRKKNKGGENSLSGAKKR
2	36	56	RRRRKKNKGGENSLSGAKKRK
3	37	56	RRRRKKNKGGENSLSGAKKR
4	37	57	RRRRKKNKGGENSLSGAKKRK
5	38	58	RRRRKKNKGGENSLSGAKKRK
6	39	59	RRRRKKNKGGENSLSGAKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	2e-75	HD-ZIP family protein