PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022742492.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

RAV

Protein Properties

Length: 402aa MW: 46062.3 Da PI: 9.092

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022742492.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	32.2	2.7e-10	103	151	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s++kGV + k +g+W A+++ + +r++lg+f ++++Aa a++ a+ +++ XP_022742492.1 103 SQFKGVMRQK-NGQWGAQLYA------NhTRIWLGTFKSEQDAAMAYDSAAIMFRN 151 789*8666.8**887......34******99*******987775 PP
2	B3	86.6	2.1e-27	226	315	1	85
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k+ltpsdv+k++rlv+pkk+a +h g +ke+ +l+++d+ r W+++++y+++s+++v+t+GW++F k+n+Lk +D++ F++ XP_022742492.1 226 FQKELTPSDVGKLNRLVIPKKYAVKHfppvsGTEKESAAELIFYDKFMRLWKFRYCYWNSSRSFVFTRGWNRFLKENDLKPNDVISFYVC 315 99***************************8899999***********************************************954 PP

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence
MFESINSLVV IESVPKLKVS SSNHNHGSKD KKYITNYCNT FTNIVCCTDR STIICYFVET 60 MEQEILSVIS SGEVKATSEV SDSISTSHPA KKRLRSGSNG TSSQFKGVMR QKNGQWGAQL 120 YANHTRIWLG TFKSEQDAAM AYDSAAIMFR NGDTHRNFPW TDITVEEPKF QSHYSAEAVL 180 SMIRDGSYKY KFMDYLKARS RSAKVEIDLN SVGTYSHKGL TCKQLFQKEL TPSDVGKLNR 240 LVIPKKYAVK HFPPVSGTEK ESAAELIFYD KFMRLWKFRY CYWNSSRSFV FTRGWNRFLK 300 ENDLKPNDVI SFYVCEWGSK EREGHRFCMI DVNKFAKDGA LIETANLQVR EVNLQLGLGH 360 CYGFDGEKHV KQEHELMAAH PTQELNTEGF KLFGIQINRS KD

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence

MFESINSLVV IESVPKLKVS SSNHNHGSKD KKYITNYCNT FTNIVCCTDR STIICYFVET  60
MEQEILSVIS SGEVKATSEV SDSISTSHPA KKRLRSGSNG TSSQFKGVMR QKNGQWGAQL  120
YANHTRIWLG TFKSEQDAAM AYDSAAIMFR NGDTHRNFPW TDITVEEPKF QSHYSAEAVL  180
SMIRDGSYKY KFMDYLKARS RSAKVEIDLN SVGTYSHKGL TCKQLFQKEL TPSDVGKLNR  240
LVIPKKYAVK HFPPVSGTEK ESAAELIFYD KFMRLWKFRY CYWNSSRSFV FTRGWNRFLK  300
ENDLKPNDVI SFYVCEWGSK EREGHRFCMI DVNKFAKDGA LIETANLQVR EVNLQLGLGH  360
CYGFDGEKHV KQEHELMAAH PTQELNTEGF KLFGIQINRS KD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50680.1	4e-99	RAV family protein