PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022743373.1
Organism
Durio zibethinus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
Family MIKC_MADS
Protein Properties Length: 233aa    MW: 27462.1 Da    PI: 7.3019
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022743373.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.85e-27959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien++ rqvtfskRr+g+lKK +ELSvLCda++ +iifsstgk+  y+s
  XP_022743373.1  9 KRIENQTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKMCQYCS 59
                    79***********************************************96 PP
2K-box80.54.1e-2771170199
           K-box   1 yqkssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                     yqk sg++  e+ ++e+l++ela L+ke++ Lq ++Rh+ Ged++s+ ++ L qLeq+Le+sl+k+R++Knell +q+++l++ke+ l+e+n ++
  XP_022743373.1  71 YQKVSGTRiPEHDNWEHLYNELAVLRKETRRLQLSLRHYTGEDMSSIPFEGLDQLEQELEHSLTKVRERKNELLQQQLDNLRRKERILEEDNSNM 165
                     78889999889999******************************************************************************998 PP

           K-box  95 rkkle 99 
                      + ++
  XP_022743373.1 166 YRWIQ 170
                     87666 PP
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    
MGRGKIPIKR IENQTTRQVT FSKRRAGLLK KTHELSVLCD AQIGLIIFSS TGKMCQYCSE  60
PYRMEQIIER YQKVSGTRIP EHDNWEHLYN ELAVLRKETR RLQLSLRHYT GEDMSSIPFE  120
GLDQLEQELE HSLTKVRERK NELLQQQLDN LRRKERILEE DNSNMYRWIQ EHRAAIEYQQ  180
GGLEAKAVEH QQVLDQFPFY GEPSSVLQLA TIPQHFHSYQ LQLAQPNLQD SNV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.22e-98MIKC_MADS family protein