PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022745166.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

GATA

Protein Properties

Length: 485aa MW: 54564.2 Da PI: 9.2893

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022745166.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	52.8	5.5e-17	412	446	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++C + Tp+WR gp g+ktLCnaCG++y++ +l XP_022745166.1 412 CTHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRL 446 *******************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 485 aa Download sequence
MAQFTPQGRL KLLFHGDGME SKDPFHYKLV SNVFGGSGGL KSLQVHNSTT RRLYFSYSLK 60 KGSKFNAKAC LNASNEGIYD EADYDSEFET DDLACFRGLV LDSSYRPVNV VCWRRAICLE 120 FMEKADVLEY YDQTVNSPSG SFYIPAVLRV PHLLQVVKRR RIRNNLSRKN VLFRDNFTCQ 180 YCEADENLTI DHVLPVARGG EWKWENLVAA CAKCNSMKGQ KTPDEANMKL IKVPKEVDMS 240 LEWLSIFVED CFSSSGNYIP VGAAANVQNK STTATKPTKS LEQKPQQTPP SLQKFSVPGK 300 ARSKRKRAAT TLSKTKMNPF SSWSNHLNSH NPNLQLACSD PPLLQQAYWL AESELIVPKK 360 EEDDCKNSSS NLMGNSEVEQ SKKEEMKKEK VVVSKESLGS EEGNSGQQPR RCTHCLAQRT 420 PQWRAGPLGP KTLCNACGVR YKSGRLLPEY RPAKSPTFVS YLHSNSHKKV MEMRMALLSS 480 IPSEQ

Sequence ? help Back to Top

Protein Sequence Length: 485 aa Download sequence

MAQFTPQGRL KLLFHGDGME SKDPFHYKLV SNVFGGSGGL KSLQVHNSTT RRLYFSYSLK  60
KGSKFNAKAC LNASNEGIYD EADYDSEFET DDLACFRGLV LDSSYRPVNV VCWRRAICLE  120
FMEKADVLEY YDQTVNSPSG SFYIPAVLRV PHLLQVVKRR RIRNNLSRKN VLFRDNFTCQ  180
YCEADENLTI DHVLPVARGG EWKWENLVAA CAKCNSMKGQ KTPDEANMKL IKVPKEVDMS  240
LEWLSIFVED CFSSSGNYIP VGAAANVQNK STTATKPTKS LEQKPQQTPP SLQKFSVPGK  300
ARSKRKRAAT TLSKTKMNPF SSWSNHLNSH NPNLQLACSD PPLLQQAYWL AESELIVPKK  360
EEDDCKNSSS NLMGNSEVEQ SKKEEMKKEK VVVSKESLGS EEGNSGQQPR RCTHCLAQRT  420
PQWRAGPLGP KTLCNACGVR YKSGRLLPEY RPAKSPTFVS YLHSNSHKKV MEMRMALLSS  480
IPSEQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	158	162	KRRRI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32890.1	1e-38	GATA family protein