PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022745477.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

C3H

Protein Properties

Length: 377aa MW: 41543.2 Da PI: 8.3116

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022745477.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.9	1.3e-11	58	84	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ rtG C++G++C+F+H+p XP_022745477.1 58 PGEPDCSYYIRTGLCRFGATCRFNHPP 84 5789*********************97 PP
2	zf-CCCH	39.1	1.3e-12	105	129	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ XP_022745477.1 105 QPECQYYLKTGTCKFGATCKFHHPR 129 799********************96 PP
3	zf-CCCH	36.8	6.4e-12	151	175	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + +C +++rtG+Ck+G++CkF+H++ XP_022745477.1 151 ETECAYYLRTGQCKFGSTCKFHHPQ 175 578********************97 PP
4	zf-CCCH	38.1	2.5e-12	310	336	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ C+F+H++ XP_022745477.1 310 PGQPECQFYMKTGDCKFGAVCRFHHPR 336 5789*********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence
MEFSFDAGIP MSRTAAAAAA AAVTEGTSLS PSLNQDAMWQ MNLRSGEIME SGPYPEHPGE 60 PDCSYYIRTG LCRFGATCRF NHPPNRKLAI AAARMKGDFP ERVGQPECQY YLKTGTCKFG 120 ATCKFHHPRD KAGIAGRVSL NILGYPLRPN ETECAYYLRT GQCKFGSTCK FHHPQPTNMM 180 VSLRGSPIYP TIPSPTTPGQ QSYPGDITNW SRASFIPNPR WQGPSSYAPL ILPQGMVSVP 240 GWNAYSGQLA SVSSSENLQL ANGNNQIYGT SRQNESVAAE SQASFSQFRS GSVPVGFYAL 300 QRENVFPERP GQPECQFYMK TGDCKFGAVC RFHHPRERVL PAPDCMLSPL GLPLRPKMDI 360 CFDTLFGQLV ILWLPLD

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence

MEFSFDAGIP MSRTAAAAAA AAVTEGTSLS PSLNQDAMWQ MNLRSGEIME SGPYPEHPGE  60
PDCSYYIRTG LCRFGATCRF NHPPNRKLAI AAARMKGDFP ERVGQPECQY YLKTGTCKFG  120
ATCKFHHPRD KAGIAGRVSL NILGYPLRPN ETECAYYLRT GQCKFGSTCK FHHPQPTNMM  180
VSLRGSPIYP TIPSPTTPGQ QSYPGDITNW SRASFIPNPR WQGPSSYAPL ILPQGMVSVP  240
GWNAYSGQLA SVSSSENLQL ANGNNQIYGT SRQNESVAAE SQASFSQFRS GSVPVGFYAL  300
QRENVFPERP GQPECQFYMK TGDCKFGAVC RFHHPRERVL PAPDCMLSPL GLPLRPKMDI  360
CFDTLFGQLV ILWLPLD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-164	C3H family protein