PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022746040.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

NF-YC

Protein Properties

Length: 281aa MW: 30585.4 Da PI: 4.7389

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022746040.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	40.5	6.1e-13	1	69	30	98
NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++adedv +i+ +Pvl+ska elf+ +l r++ + + +t++ ++ +v++ ++fdfl div r XP_022746040.1 1 MQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSFNVFDFLRDIVSR 69 899***************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence
MQADEDVGKI ALAVPVLVSK ALELFLQDLC DRTYEITLQR GAKTMNSLHL KHCVQSFNVF 60 DFLRDIVSRV PDYGHGHSDA AAADDRTVSR RRKAAGDEVN DSDEESKRSR MHDVGHAGTS 120 GRGRGRGRGR GRGRGARNAE RDSHREIESE PCSTLQQSNK SHSTPGMMID DGSESKELMK 180 ENAIGEDANQ AVRNFDLNSE VNENVDAKAS AVVATAAASA AATAAVAATQ PSSAEPTTET 240 KHEEYPGWSL SDMDKMAIDP LQLAQLGRRL DEDEEDYDEE G

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	122	131	RGRGRGRGRG
2	122	132	RGRGRGRGRGR
3	124	133	RGRGRGRGRG
4	124	134	RGRGRGRGRGR
5	126	135	RGRGRGRGRG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	2e-62	NF-YC family protein