PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022746848.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

HD-ZIP

Protein Properties

Length: 345aa MW: 38148.7 Da PI: 8.3681

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022746848.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.1	1.3e-17	173	227	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k XP_022746848.1 173 RKKLRLSKDQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 227 678899***********************************************98 PP
2	HD-ZIP_I/II	127.6	5.2e-41	173	263	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlsk+q+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk XP_022746848.1 173 RKKLRLSKDQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELR-ALK 263 69*************************************************************************************9.555 PP

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence
MELALSLGDP SKPFTFLDKT PKLSSKNLGF CMGLGSQEKR DGFEAENRGE ASRDGDDKRV 60 SSDPPLQLDL LPFSPVHRTQ PSSQLRFPWL TDNQTGSSEI PGRGLDVNRL PVVAVADEVE 120 EGAALSSPNS AVSSFQMDFG IRNGSSRGKR DLEVETERAS SRASDDDENG STRKKLRLSK 180 DQSAFLEESF KEHNTLNPKQ KLALAKQLNL RPRQVEVWFQ NRRARTKLKQ TEVDCEYLKR 240 CCETLTEENR RLQKELQELR ALKTSQPFYM QLPATTLTMC PSCERVATTS TTAAATPNTS 300 AAAGSNTDTK TGILPLTKTK GYPFSALQTH VTQSQPQPQA HQAAS

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence

MELALSLGDP SKPFTFLDKT PKLSSKNLGF CMGLGSQEKR DGFEAENRGE ASRDGDDKRV  60
SSDPPLQLDL LPFSPVHRTQ PSSQLRFPWL TDNQTGSSEI PGRGLDVNRL PVVAVADEVE  120
EGAALSSPNS AVSSFQMDFG IRNGSSRGKR DLEVETERAS SRASDDDENG STRKKLRLSK  180
DQSAFLEESF KEHNTLNPKQ KLALAKQLNL RPRQVEVWFQ NRRARTKLKQ TEVDCEYLKR  240
CCETLTEENR RLQKELQELR ALKTSQPFYM QLPATTLTMC PSCERVATTS TTAAATPNTS  300
AAAGSNTDTK TGILPLTKTK GYPFSALQTH VTQSQPQPQA HQAAS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	172	178	TRKKLRL
2	222	230	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	4e-84	HD-ZIP family protein