PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022749300.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

C3H

Protein Properties

Length: 465aa MW: 51164 Da PI: 8.2335

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022749300.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	33.6	6.5e-11	106	130	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++ t tCk+Gd+CkF H+ XP_022749300.1 106 GEKDCAHYMLTRTCKFGDSCKFDHP 130 7889********************8 PP
2	zf-CCCH	34.4	3.7e-11	159	183	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C+ff++t Ck+G++CkF+H++ XP_022749300.1 159 EPDCPFFLKTQRCKFGSKCKFNHPK 183 589********************96 PP
3	zf-CCCH	38.8	1.5e-12	206	230	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C f+++tG Ck+G++CkF+H++ XP_022749300.1 206 EPPCAFYMKTGKCKFGATCKFHHPK 230 79*********************96 PP
4	zf-CCCH	38.3	2.3e-12	277	300	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C+f+++tG CkyG++C+++H+ XP_022749300.1 277 EVDCPFYLKTGSCKYGSSCRYNHP 300 579********************9 PP
5	zf-CCCH	43.6	4.8e-14	368	392	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C+++++tG+Ck+GdrCkF+H+ XP_022749300.1 368 GQSECDYYMKTGECKFGDRCKFHHP 392 7899********************9 PP
6	zf-CCCH	39.5	9.4e-13	424	445	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C+++++tGtCkyG++CkF H+p XP_022749300.1 424 CPYYMKTGTCKYGATCKFDHPP 445 ********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence
MANQLYGYSS PSPSASLSLR YLDSDSTTHS HFLHHLQPWP PTVDVSSSAA AAPPIKRPSQ 60 VLYHQNVLDA HNTIGQIEAW YSTSSLVKRP RFESSSNLPI YPQRPGEKDC AHYMLTRTCK 120 FGDSCKFDHP IWVPEGGIPY WKEVPLLATG ESLPERAEEP DCPFFLKTQR CKFGSKCKFN 180 HPKDKLATSG DSENTQVSVL PDRPSEPPCA FYMKTGKCKF GATCKFHHPK DIQIPSFGQG 240 NTKCEQIEAV TKIGGATVDL KPAQFLNSKG LPIRLDEVDC PFYLKTGSCK YGSSCRYNHP 300 DRNAFNPPAA AIGHSLIASA NNLNIGVVTP ASSLYQTIDP RLSQTTLLAQ QTLPTMGVAP 360 TVYPQRPGQS ECDYYMKTGE CKFGDRCKFH HPVDRLASTT NETSQQAVKL TLAGFPRREG 420 SVHCPYYMKT GTCKYGATCK FDHPPPGEVM AMAAAQGTPT TIGQD

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence

MANQLYGYSS PSPSASLSLR YLDSDSTTHS HFLHHLQPWP PTVDVSSSAA AAPPIKRPSQ  60
VLYHQNVLDA HNTIGQIEAW YSTSSLVKRP RFESSSNLPI YPQRPGEKDC AHYMLTRTCK  120
FGDSCKFDHP IWVPEGGIPY WKEVPLLATG ESLPERAEEP DCPFFLKTQR CKFGSKCKFN  180
HPKDKLATSG DSENTQVSVL PDRPSEPPCA FYMKTGKCKF GATCKFHHPK DIQIPSFGQG  240
NTKCEQIEAV TKIGGATVDL KPAQFLNSKG LPIRLDEVDC PFYLKTGSCK YGSSCRYNHP  300
DRNAFNPPAA AIGHSLIASA NNLNIGVVTP ASSLYQTIDP RLSQTTLLAQ QTLPTMGVAP  360
TVYPQRPGQS ECDYYMKTGE CKFGDRCKFH HPVDRLASTT NETSQQAVKL TLAGFPRREG  420
SVHCPYYMKT GTCKYGATCK FDHPPPGEVM AMAAAQGTPT TIGQD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	0.0	C3H family protein