PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022752124.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

HD-ZIP

Protein Properties

Length: 209aa MW: 24197.7 Da PI: 6.6818

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022752124.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.4	5.9e-19	55	108	4	57
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++++++eq++ Le F +++++ e++ +LA +lgL+ rqV vWFqNrRa++k+ XP_022752124.1 55 KRKLSQEQVNLLELNFGNEHKLESERKDRLALELGLDPRQVAVWFQNRRARWKN 108 5689************************************************95 PP
2	HD-ZIP_I/II	116.7	1.4e-37	54	144	2	92
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kkr+ls+eqv+lLE +F +e+kLe+erK +la eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+ ++ ++ e+++Le+ev +L+e+l XP_022752124.1 54 KKRKLSQEQVNLLELNFGNEHKLESERKDRLALELGLDPRQVAVWFQNRRARWKNKKLEEEYSKLKSVHEGVVLEKCHLESEVLKLKEQLC 144 9***************************************************************************************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence
MTTQMNELQD HMALISQMYP GVYTQIVPQQ GDLICPRRRR KKNKGGENGL AGIKKRKLSQ 60 EQVNLLELNF GNEHKLESER KDRLALELGL DPRQVAVWFQ NRRARWKNKK LEEEYSKLKS 120 VHEGVVLEKC HLESEVLKLK EQLCEAEKEI QRLGERVDGV SINSPSSSLS MEAIDPPFLG 180 EFGVGYDQDV FYIGENSYIH GMEWMNLYM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	37	56	RRRRKKNKGGENGLAGIKKR
2	37	57	RRRRKKNKGGENGLAGIKKRK
3	38	57	RRRRKKNKGGENGLAGIKKR
4	38	58	RRRRKKNKGGENGLAGIKKRK
5	39	59	RRRRKKNKGGENGLAGIKKRK
6	40	60	RRRRKKNKGGENGLAGIKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	8e-66	HD-ZIP family protein