PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022756278.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

RAV

Protein Properties

Length: 353aa MW: 40812 Da PI: 8.5952

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022756278.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	31.9	3.2e-10	48	93	3	54
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 +kGV ++g W A+I+ + +r++lg+f +++eAa a++ a+ kl+ XP_022756278.1 48 FKGVV-PQQNGHWGAQIYA------NhQRIWLGTFKFEKEAAMAYDSAAIKLR 93 67885.555888**999......44******99**********98 PP
2	B3	84.3	1.1e-26	170	265	1	84
EEEE-..-HHHHTT-EE--HHH.HTT..............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 f+k+ltpsdv+k++rlv+pkk+a ++ +g+ e+++l+++d+ +W+++++y+++s+++v+t+GW++Fvk+++L+ D+++ XP_022756278.1 170 FQKELTPSDVGKLNRLVIPKKYAVKYfpyicendqqsivsSGI--EDTELVFYDKLMTTWKFRYCYWRSSQSFVFTRGWNRFVKEKKLRKSDTIT 262 99***************************887776655334..7789******************************************** PP EEE CS B3 82 Fkl 84 F+ XP_022756278.1 263 FYT 265 *94 PP

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence
MQEEESSMVL NAKLNVAAAG TSDSGTSNYR LRASKRPRQD NCASMASFKG VVPQQNGHWG 60 AQIYANHQRI WLGTFKFEKE AAMAYDSAAI KLRSGDSHRN FPWTDHNIHE PNFQNLYTTE 120 VVLNMIRDGS YRAKFADYVK ILSKNYGKLD TNLNKNLMHG DIQFSCMQLF QKELTPSDVG 180 KLNRLVIPKK YAVKYFPYIC ENDQQSIVSS GIEDTELVFY DKLMTTWKFR YCYWRSSQSF 240 VFTRGWNRFV KEKKLRKSDT ITFYTCECPG GEKNGQNFFL INVNYNEENV FNRLESSTHQ 300 DNLPVELEVN LGKNYYCRSV DNTQFNEDKA LIGFESAHNV EKKSITLFGV QIN

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence

MQEEESSMVL NAKLNVAAAG TSDSGTSNYR LRASKRPRQD NCASMASFKG VVPQQNGHWG  60
AQIYANHQRI WLGTFKFEKE AAMAYDSAAI KLRSGDSHRN FPWTDHNIHE PNFQNLYTTE  120
VVLNMIRDGS YRAKFADYVK ILSKNYGKLD TNLNKNLMHG DIQFSCMQLF QKELTPSDVG  180
KLNRLVIPKK YAVKYFPYIC ENDQQSIVSS GIEDTELVFY DKLMTTWKFR YCYWRSSQSF  240
VFTRGWNRFV KEKKLRKSDT ITFYTCECPG GEKNGQNFFL INVNYNEENV FNRLESSTHQ  300
DNLPVELEVN LGKNYYCRSV DNTQFNEDKA LIGFESAHNV EKKSITLFGV QIN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51120.1	1e-114	RAV family protein