PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022758060.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

C3H

Protein Properties

Length: 443aa MW: 47921.5 Da PI: 9.4837

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022758060.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	34.2	4.2e-11	18	42	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + C +++rtG+C yG+rC+++H++ XP_022758060.1 18 LPDCVYYMRTGFCGYGNRCRYNHPR 42 589********************96 PP
2	zf-CCCH	38.9	1.4e-12	62	87	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+f+++tGtCk+G++CkF+H++ XP_022758060.1 62 GEPACQFYLKTGTCKFGASCKFHHPK 87 5789********************96 PP
3	zf-CCCH	33.7	6.1e-11	108	133	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C ++++tG Ck+G +CkF+H++ XP_022758060.1 108 GEKECLYYLKTGRCKFGITCKFHHPQ 133 7899********************97 PP
4	zf-CCCH	34.3	4.1e-11	264	290	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C +++rtG Ck+G +C+++H++ XP_022758060.1 264 PGEPECEYYLRTGNCKFGLSCRYHHPR 290 5799*********************96 PP
5	zf-CCCH	32.5	1.5e-10	314	335	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+f++++G+Ck+G++CkF H+ XP_022758060.1 314 ACSFYLQNGHCKFGSTCKFDHP 335 6********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 443 aa Download sequence
MWQLSLKGTE LYPERPGLPD CVYYMRTGFC GYGNRCRYNH PRNRAAVEAA VRATGKYPER 60 RGEPACQFYL KTGTCKFGAS CKFHHPKHGG GSFSHVPLNI YAYPLRPGEK ECLYYLKTGR 120 CKFGITCKFH HPQPAGTSMP APAPQFYQPV QSPSVPVPEQ YGGASTSVRV ARAPLLPGSY 180 VQGAYGPVLF PPGVVPIPGW SHYSAPVSPV LSPGAQPAVG ATSLYGLTQL SSSTPSLAGP 240 YPSLPSSTGP SSSNQKEQTF PERPGEPECE YYLRTGNCKF GLSCRYHHPR DRVVPLTNCV 300 LSPLGLPLRP GVHACSFYLQ NGHCKFGSTC KFDHPVRTMR YSPSTSSLID MPVTPYPVGS 360 LLATLAPSSS SSELRPELIS GSKKDSYLNR IPSSASTSSS SVSLIFSQTG SIPLSDLQLS 420 SQSSVPLSSS RSTRQVGEVR RLN

Sequence ? help Back to Top

Protein Sequence Length: 443 aa Download sequence

MWQLSLKGTE LYPERPGLPD CVYYMRTGFC GYGNRCRYNH PRNRAAVEAA VRATGKYPER  60
RGEPACQFYL KTGTCKFGAS CKFHHPKHGG GSFSHVPLNI YAYPLRPGEK ECLYYLKTGR  120
CKFGITCKFH HPQPAGTSMP APAPQFYQPV QSPSVPVPEQ YGGASTSVRV ARAPLLPGSY  180
VQGAYGPVLF PPGVVPIPGW SHYSAPVSPV LSPGAQPAVG ATSLYGLTQL SSSTPSLAGP  240
YPSLPSSTGP SSSNQKEQTF PERPGEPECE YYLRTGNCKF GLSCRYHHPR DRVVPLTNCV  300
LSPLGLPLRP GVHACSFYLQ NGHCKFGSTC KFDHPVRTMR YSPSTSSLID MPVTPYPVGS  360
LLATLAPSSS SSELRPELIS GSKKDSYLNR IPSSASTSSS SVSLIFSQTG SIPLSDLQLS  420
SQSSVPLSSS RSTRQVGEVR RLN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	0.0	C3H family protein