PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022762268.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

bHLH

Protein Properties

Length: 654aa MW: 73342.5 Da PI: 5.3703

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022762268.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34	5.4e-11	394	436	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 +Er+RR+++N+++ Lr+l+Pk + Kl+ a+iL A+e++k+L XP_022762268.1 394 VAERKRRKKLNERLYALRSLVPKiS------KLDRASILGDAIEFVKEL 436 68*******************66......*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 654 aa Download sequence
MMMQLSIAIN SNLYAPLLFF FLVVSCILRL FFFLSYSVKR SSHNDIGSAR SFRMNIFQNL 60 MDRLRQLVGP KGWDYCVLWK LSDDQRFIEW VDCCCAGTES IESGGELQFP VTPVLPCRDV 120 MFQHPKTKSC ELLAQLPSCM PLDSGSTHAQ ALISNQPKWL NFSNNSASNV LEEIVGTRIL 180 IPVAQGLIEL FVAKSVCQDQ NVMDYIVTLC NISLEQGAMM NSSSMDTHFT MLNAQALNQL 240 QAKPHLGNEN DQKDPPNHFQ PPVSLATALE TLNLPYDISV DQIRPTNSLQ QYNYFSEDKT 300 KIDALVEGSH DIFLSDQVIN PYKSSGDNGL QEMDPLNSMM TNESIVIQGN EKDSIKQENG 360 RSDSLSDCSD QNDDEDDARY QRRKGSNGQS KNLVAERKRR KKLNERLYAL RSLVPKISKL 420 DRASILGDAI EFVKELLNQV KELQDELEEH SENDIGAKKT GMNGIHKNVQ SEIFSQNEQI 480 PVDSNPEHDK GPNGLPVGGN GSVSKQNQDA EITTDKTQQM EAQVEVAQID GNQFFVKVFC 540 EHKPGGFVRL MEALDSFGLE VTNANANSCT GLVSNVFKVE KKDGEMIQAD YVRDSLLELT 600 RNPSKGLSEM AKASENNNGI ECNYHNQQQL QHHLHNPHIS SHHHHLHHCP KQAA

Sequence ? help Back to Top

Protein Sequence Length: 654 aa Download sequence

MMMQLSIAIN SNLYAPLLFF FLVVSCILRL FFFLSYSVKR SSHNDIGSAR SFRMNIFQNL  60
MDRLRQLVGP KGWDYCVLWK LSDDQRFIEW VDCCCAGTES IESGGELQFP VTPVLPCRDV  120
MFQHPKTKSC ELLAQLPSCM PLDSGSTHAQ ALISNQPKWL NFSNNSASNV LEEIVGTRIL  180
IPVAQGLIEL FVAKSVCQDQ NVMDYIVTLC NISLEQGAMM NSSSMDTHFT MLNAQALNQL  240
QAKPHLGNEN DQKDPPNHFQ PPVSLATALE TLNLPYDISV DQIRPTNSLQ QYNYFSEDKT  300
KIDALVEGSH DIFLSDQVIN PYKSSGDNGL QEMDPLNSMM TNESIVIQGN EKDSIKQENG  360
RSDSLSDCSD QNDDEDDARY QRRKGSNGQS KNLVAERKRR KKLNERLYAL RSLVPKISKL  420
DRASILGDAI EFVKELLNQV KELQDELEEH SENDIGAKKT GMNGIHKNVQ SEIFSQNEQI  480
PVDSNPEHDK GPNGLPVGGN GSVSKQNQDA EITTDKTQQM EAQVEVAQID GNQFFVKVFC  540
EHKPGGFVRL MEALDSFGLE VTNANANSCT GLVSNVFKVE KKDGEMIQAD YVRDSLLELT  600
RNPSKGLSEM AKASENNNGI ECNYHNQQQL QHHLHNPHIS SHHHHLHHCP KQAA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	382	402	RRKGSNGQSKNLVAERKRRKK
2	396	403	ERKRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	1e-139	bHLH family protein