PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022762399.1
Organism
Durio zibethinus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
Family MIKC_MADS
Protein Properties Length: 215aa    MW: 24410.9 Da    PI: 7.6275
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022762399.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.71.3e-27959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+i+n   rqvtfskRr+g++KKA+ELS+LCdae+a+++fs tgkl+eyss
  XP_022762399.1  9 KKIDNVAARQVTFSKRRKGLFKKAHELSTLCDAEIALLVFSATGKLFEYSS 59
                    689**********************************************96 PP
2K-box49.61.7e-17901721799
           K-box  17 lqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                      +  +a L ke+ +  +e+R+l Ge+L+ L+l+eL++Le+ Le +l+++ ++K+e  +++i++l++k  el een+ L++++e
  XP_022762399.1  90 ESSTYAMLSKEVAEKTQELRQLRGEELQGLDLEELKHLEKLLEGGLSQVTKTKDERCMKEISTLKRKGAELMEENQLLKQQME 172
                     5677888999999889999*************************************************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    
MARKKIQIKK IDNVAARQVT FSKRRKGLFK KAHELSTLCD AEIALLVFSA TGKLFEYSST  60
STWQVIERRN LESERFDRLD TIPSLELQLE SSTYAMLSKE VAEKTQELRQ LRGEELQGLD  120
LEELKHLEKL LEGGLSQVTK TKDERCMKEI STLKRKGAEL MEENQLLKQQ MENLPHVVEA  180
VVAHQGQSSE SIAHVQRSGD PPQGYNSSDV SLRLG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.11e-60MIKC_MADS family protein