PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022762461.1
Organism
Durio zibethinus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
Family MIKC_MADS
Protein Properties Length: 228aa    MW: 26958.6 Da    PI: 8.4457
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022762461.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.94.8e-27959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien++ rqvtfskRr+g+lKK +ELSvLCda++ +iifsstgk+  y+s
  XP_022762461.1  9 KRIENQTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKMCQYCS 59
                    79***********************************************96 PP
2K-box60.56.8e-2171165199
           K-box   1 yqkssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                     yqk +g++  e+ + e+l++ela L+ke++ Lq + R++ Ged++s+ l+eL qLeq+Le+s++k+R++K+     q+++l++ke+ l+een ++
  XP_022762461.1  71 YQKVTGTRiPEHDNREHLYNELAVLRKETRRLQLSMRRYTGEDMSSIPLEELDQLEQELERSVNKVRDRKQ-----QLDNLRRKERILEEENSNM 160
                     678888888888999*******************************************************7.....57**************999 PP

           K-box  95 rkkle 99 
                      + ++
  XP_022762461.1 161 YRWIQ 165
                     87766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    
MGRGKIPIKR IENQTTRQVT FSKRRAGLLK KTHELSVLCD AQIGLIIFSS TGKMCQYCSE  60
PYRMEQIIER YQKVTGTRIP EHDNREHLYN ELAVLRKETR RLQLSMRRYT GEDMSSIPLE  120
ELDQLEQELE RSVNKVRDRK QQLDNLRRKE RILEEENSNM YRWIQEHRAA IEYQQGGLEA  180
KPVEHQQVLD QFPFYGEPSS VLQLATIPQQ FHSYQLQLAQ PNLQDSNV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.11e-89MIKC_MADS family protein