PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022766833.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

HD-ZIP

Protein Properties

Length: 346aa MW: 38132.7 Da PI: 9.2887

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022766833.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	48.4	1.5e-15	178	231	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++++++ ++ LAk+l+L rqV vWFqNrRa+ k XP_022766833.1 178 RKKLRLSKEQSAFLEESFKEHNTLNPQKL-ALAKQLNLRPRQVEVWFQNRRARTK 231 778899****************98765.7********************98 PP
2	HD-ZIP_I/II	120.6	7.8e-39	178	267	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlskeq+++LEesF+e+++L+p +K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk XP_022766833.1 178 RKKLRLSKEQSAFLEESFKEHNTLNP-QKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELR-ALK 267 69*********************9.69********************************************************9.555 PP

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence
MELALSLGEP SKPFSFLNKT PKLTSKNLGF CMVLGNGFRS QEKGVAFEGG SRGEASRDGD 60 HDKRFSSDPP RQLDLLPFSP VPRTQPSSQL RFRWLTNNQT GSSEGPGRGL DVNRLPVVAM 120 ADEAEEGAAL SSPNSAVSSF QMDFGIRNGS SIGKRDLEVE TERASSRASD DDENGSTRKK 180 LRLSKEQSAF LEESFKEHNT LNPQKLALAK QLNLRPRQVE VWFQNRRART KLKQTEVDCE 240 YLKRCCETLT EENRRLQKEL QELRALKTSQ PFYMQLPATT LTMCPSCERV ATTSTTNASA 300 AAAAPSGSNT DAKTGGLTLT KTRGYPFSPI QTHVTQSQPQ AHQAAS

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence

MELALSLGEP SKPFSFLNKT PKLTSKNLGF CMVLGNGFRS QEKGVAFEGG SRGEASRDGD  60
HDKRFSSDPP RQLDLLPFSP VPRTQPSSQL RFRWLTNNQT GSSEGPGRGL DVNRLPVVAM  120
ADEAEEGAAL SSPNSAVSSF QMDFGIRNGS SIGKRDLEVE TERASSRASD DDENGSTRKK  180
LRLSKEQSAF LEESFKEHNT LNPQKLALAK QLNLRPRQVE VWFQNRRART KLKQTEVDCE  240
YLKRCCETLT EENRRLQKEL QELRALKTSQ PFYMQLPATT LTMCPSCERV ATTSTTNASA  300
AAAAPSGSNT DAKTGGLTLT KTRGYPFSPI QTHVTQSQPQ AHQAAS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	177	183	TRKKLRL
2	226	234	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	3e-97	HD-ZIP family protein