PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022767899.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

Trihelix

Protein Properties

Length: 587aa MW: 65238.8 Da PI: 7.0281

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022767899.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	93.9	1.5e-29	78	162	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+++e+laL+++r++m+ ++r+++ k+plWeevs+k++e g++rs+k+Ckek+en+ k++k++k+g+ ++ + +t+++f+qlea XP_022767899.1 78 RWPRRETLALLKIRSDMDVTFRDASVKGPLWEEVSRKLAELGYHRSAKKCKEKFENVYKYHKRTKDGRTGK--ADGKTYRFFNQLEA 162 8******************************************************************96..66678*****85 PP
2	trihelix	100.9	9.9e-32	414	499	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++ ev+aLi++r++++ +++++ k+plWe+ s++m++ g++r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a XP_022767899.1 414 RWPNVEVQALIKLRTSLDAKYQDSGPKGPLWEAMSAAMKKLGYNRNAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 499 8*******************************************************************8.99*********85 PP

Sequence ? help Back to Top
Protein Sequence Length: 587 aa Download sequence
MLGGGDKSAS VLGSSSDGGA GGDVAATATV SSSGARDGSS GARDGSSEAL PPNGYSNNSG 60 EDDRGRVDEG DRSFGGNRWP RRETLALLKI RSDMDVTFRD ASVKGPLWEE VSRKLAELGY 120 HRSAKKCKEK FENVYKYHKR TKDGRTGKAD GKTYRFFNQL EALENQPSIQ SPAAAAAPPQ 180 LKPQAQTAMP APNPPSLPHI TVPSPNINLT DPSFPSTNPT IQPPLPATNP TIPSFPNIFA 240 DNSTSSSTSS DLELEGRRKR KRKWKEFFVR LMKEVIQKQE DMQKKFLEAI EKREHERMVR 300 EDAWRMQEMS RINREREILA QERSIAAAKD AAVMAFLQKL SEQQNPGQPQ NNSLPSQQPQ 360 APPPQRVSVE APVALPTEAA VPAPAPPLVL LPMVNLDVLK TDNGDKSYTP SSSRWPNVEV 420 QALIKLRTSL DAKYQDSGPK GPLWEAMSAA MKKLGYNRNA KRCKEKWENI NKYFKKVKES 480 NKKRPEDSKT CPYFHQLDAL YREKNKHDSS SNQLKPENAV PLMIRPEQQW PPSPSEPNQH 540 QHDHVMEDME SDQNQEEDDK DGDDEEEDEG GSYEIVASKP VSMGTGE

Sequence ? help Back to Top

Protein Sequence Length: 587 aa Download sequence

MLGGGDKSAS VLGSSSDGGA GGDVAATATV SSSGARDGSS GARDGSSEAL PPNGYSNNSG  60
EDDRGRVDEG DRSFGGNRWP RRETLALLKI RSDMDVTFRD ASVKGPLWEE VSRKLAELGY  120
HRSAKKCKEK FENVYKYHKR TKDGRTGKAD GKTYRFFNQL EALENQPSIQ SPAAAAAPPQ  180
LKPQAQTAMP APNPPSLPHI TVPSPNINLT DPSFPSTNPT IQPPLPATNP TIPSFPNIFA  240
DNSTSSSTSS DLELEGRRKR KRKWKEFFVR LMKEVIQKQE DMQKKFLEAI EKREHERMVR  300
EDAWRMQEMS RINREREILA QERSIAAAKD AAVMAFLQKL SEQQNPGQPQ NNSLPSQQPQ  360
APPPQRVSVE APVALPTEAA VPAPAPPLVL LPMVNLDVLK TDNGDKSYTP SSSRWPNVEV  420
QALIKLRTSL DAKYQDSGPK GPLWEAMSAA MKKLGYNRNA KRCKEKWENI NKYFKKVKES  480
NKKRPEDSKT CPYFHQLDAL YREKNKHDSS SNQLKPENAV PLMIRPEQQW PPSPSEPNQH  540
QHDHVMEDME SDQNQEEDDK DGDDEEEDEG GSYEIVASKP VSMGTGE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	257	262	RRKRKR
2	257	263	RRKRKRK
3	258	263	RKRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	1e-155	Trihelix family protein