PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022769790.1
Organism
Durio zibethinus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
Family GRAS
Protein Properties Length: 604aa    MW: 68260.9 Da    PI: 6.13
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022769790.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2838.6e-872215901374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalkl.fsevsPilkf 93 
                     lv+lLl++Ae v  +++e+a++lL+r + +as++g+p+qR++ yf+eAL++r+ + ++s + k l+++ ++e  +   ++++++  ++  P++++
  XP_022769790.1 221 LVHLLLAAAEKVGYEQFERASRLLSRCEWIASERGNPVQRIVYYFAEALRERIDKgTGSIITKELEAKVENEVAQGLGTNVTTVtAHQYLPFFQV 315
                     68*****************************************************788888888888877766644444444445899******* PP

            GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187
                      ++t  qaI e v++++++HiiD++i  G+QW  L+qaLa+R+ +    l+iT+vg    + ++++ee ++rL+++A++l++pf+fnv+++++++
  XP_022769790.1 316 MQFTGLQAIIENVASASKIHIIDLQIRSGVQWTGLMQALAEREqRRVELLKITAVGL---VGSQKIEESAKRLESVAASLNLPFSFNVVYVEDIK 407
                     *******************************************555669********...789******************************** PP

            GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282
                     +++   ++++++E+la  + l l ++ +++ +le+    +++++k+l+P ++vv+e ea+hns+sF+ rf+eal +ysa+fd+l++ l+++ e r
  XP_022769790.1 408 NIKEGLFKIRSDETLALYCPLVLRTMISRPSCLEN----LMRVMKNLNPAIMVVIEVEANHNSPSFVSRFIEALFFYSAFFDCLDTCLGHDVELR 498
                     ***************************88888888....******************************************************** PP

            GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     + vE   l  +i+n+va eg+er+ r  ++e W++ + ++ + ++++s++   qa+l++++++     +++   +s++ gWk+ p+ svSaW+
  XP_022769790.1 499 TGVESI-LCDSIRNIVALEGNERISRSVKMEVWSAFFARFRMVELEFSDSSLYQANLVIKQFPcASSCTLDRIGKSVIVGWKGTPIHSVSAWK 590
                     *****9.999*****************************************************9999*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    
MKSLNNSKMS SGLFSFNTSF DFSGIQESYN LQDYEKEAAF MKGKQHHLFG IQEIGEDLDN  60
DPLSPEYGLY QENVAKKPKD HGEQQQQLGQ ATKLDYLDEL NFSSVFSTNI AFQEEHIQDK  120
SQELVKTIKE MPSSFQLPSL ELLSNYGNGF KKLKLSKSSG TGDETKARGP KKLSTEEIMR  180
VAGARYVQFS DLRYDDFCMV MHPFGHALSG LSDDETKDVE LVHLLLAAAE KVGYEQFERA  240
SRLLSRCEWI ASERGNPVQR IVYYFAEALR ERIDKGTGSI ITKELEAKVE NEVAQGLGTN  300
VTTVTAHQYL PFFQVMQFTG LQAIIENVAS ASKIHIIDLQ IRSGVQWTGL MQALAEREQR  360
RVELLKITAV GLVGSQKIEE SAKRLESVAA SLNLPFSFNV VYVEDIKNIK EGLFKIRSDE  420
TLALYCPLVL RTMISRPSCL ENLMRVMKNL NPAIMVVIEV EANHNSPSFV SRFIEALFFY  480
SAFFDCLDTC LGHDVELRTG VESILCDSIR NIVALEGNER ISRSVKMEVW SAFFARFRMV  540
ELEFSDSSLY QANLVIKQFP CASSCTLDRI GKSVIVGWKG TPIHSVSAWK FSRDRGRVFG  600
NYRF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.12e-47GRAS family protein