PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022771000.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

C3H

Protein Properties

Length: 415aa MW: 44467.9 Da PI: 8.664

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022771000.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.8	6.5e-12	50	75	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + + C +++rtG+C yG+rC+++H++ XP_022771000.1 50 GVADCVYYMRTGFCAYGNRCRYNHPR 75 7899********************96 PP
2	zf-CCCH	35.9	1.2e-11	81	105	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tG+Ck+G +CkF+H++ XP_022771000.1 81 EKECSYYLKTGQCKFGITCKFHHPQ 105 679********************97 PP
3	zf-CCCH	37	5.5e-12	236	262	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rtG Ck+G++C+++H++ XP_022771000.1 236 PGEPECHYYMRTGDCKFGSSCRYHHPR 262 5799*********************96 PP
4	zf-CCCH	30.2	7.5e-10	287	307	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C f++++G+Ck+G++CkF H+ XP_022771000.1 287 CAFYLQNGQCKFGPTCKFDHP 307 9*******************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence
MEMYGRNPAW NGSQSGHQPE WSPAGAETGL EESMLQLSLR GTEPYPERPG VADCVYYMRT 60 GFCAYGNRCR YNHPRNRAAG EKECSYYLKT GQCKFGITCK FHHPQLAGTS MPVSAPQFYQ 120 PVQSPSVPIP EQYGGASSSV RVARPPLLPG SFVQGAYGPV LFSPGVVPIP GWSHYSAPVS 180 PVLSPGAQPA VGATSLYGLT QLSSSTPSLA GPYPSLPSST GLSSSNQKEQ TFPERPGEPE 240 CHYYMRTGDC KFGSSCRYHH PRDRVVPQTN CVLSPMGLPL RPGVQHCAFY LQNGQCKFGP 300 TCKFDHPVGT IRYSPSASSL IDMPVAPYPV GSLLATLAPS SSSSELRPEL ISGSKKDSYL 360 SRIPSSASTS SSSVGLIFSQ TGSVPLSDLQ FSSQSSGPLS SSRSTRQSGE VRRSN

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence

MEMYGRNPAW NGSQSGHQPE WSPAGAETGL EESMLQLSLR GTEPYPERPG VADCVYYMRT  60
GFCAYGNRCR YNHPRNRAAG EKECSYYLKT GQCKFGITCK FHHPQLAGTS MPVSAPQFYQ  120
PVQSPSVPIP EQYGGASSSV RVARPPLLPG SFVQGAYGPV LFSPGVVPIP GWSHYSAPVS  180
PVLSPGAQPA VGATSLYGLT QLSSSTPSLA GPYPSLPSST GLSSSNQKEQ TFPERPGEPE  240
CHYYMRTGDC KFGSSCRYHH PRDRVVPQTN CVLSPMGLPL RPGVQHCAFY LQNGQCKFGP  300
TCKFDHPVGT IRYSPSASSL IDMPVAPYPV GSLLATLAPS SSSSELRPEL ISGSKKDSYL  360
SRIPSSASTS SSSVGLIFSQ TGSVPLSDLQ FSSQSSGPLS SSRSTRQSGE VRRSN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.2	1e-160	C3H family protein