PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022771732.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

C3H

Protein Properties

Length: 437aa MW: 47506.9 Da PI: 8.3548

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022771732.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.2	9.9e-12	48	73	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C++++rtG C yG++C+F+H+ XP_022771732.1 48 PGEPDCSYYLRTGLCGYGSNCRFNHP 73 5789*********************8 PP
2	zf-CCCH	36.8	6.5e-12	92	116	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +f++tGtCkyG++Ck++H++ XP_022771732.1 92 QPDCGYFLKTGTCKYGSTCKYHHPK 116 789********************96 PP
3	zf-CCCH	37.3	4.7e-12	138	161	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C++++rtG Ck+G CkF+H++ XP_022771732.1 138 KSCPYYMRTGSCKFGIACKFHHPQ 161 66********************97 PP
4	zf-CCCH	39.6	9e-13	280	305	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++Cr+++ tGtCkyG+ Ck++H++ XP_022771732.1 280 DQPECRYYMNTGTCKYGSDCKYHHPK 305 689*********************96 PP
5	zf-CCCH	29.7	1.1e-09	326	350	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+ + +G+CkyG++C+F H+ XP_022771732.1 326 GQAVCSSYTMYGFCKYGPTCRFDHP 350 7899********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 437 aa Download sequence
MPDNRQVQNN AVSNQSAENF EEAISRLKIN DNNQEVGVSK SASYPDRPGE PDCSYYLRTG 60 LCGYGSNCRF NHPAYDAQGG QYREELPERV GQPDCGYFLK TGTCKYGSTC KYHHPKDRNG 120 AGPVTLNVLG LPIRQDEKSC PYYMRTGSCK FGIACKFHHP QPASPGAGFP INGLAGSVIL 180 PSSGVPYAGG LATWSLPRAP YVSGPRLQTQ SYMPVVVSPS QSIIPAHGWS TYMGNMSPIS 240 SAGILGSTYA YNSMNPAESG SSGQVLLSST SASNFPERPD QPECRYYMNT GTCKYGSDCK 300 YHHPKERIVN SVENGIGPLG LPARPGQAVC SSYTMYGFCK YGPTCRFDHP YVGYPSNYGL 360 SLPLSVFDTS PLTYQRMSPT AHLSEAPLPS KLPDWARNTG SVSKKHQNLE TKNSDNPPER 420 ATSPQHSLRS SSKTSHD

Sequence ? help Back to Top

Protein Sequence Length: 437 aa Download sequence

MPDNRQVQNN AVSNQSAENF EEAISRLKIN DNNQEVGVSK SASYPDRPGE PDCSYYLRTG  60
LCGYGSNCRF NHPAYDAQGG QYREELPERV GQPDCGYFLK TGTCKYGSTC KYHHPKDRNG  120
AGPVTLNVLG LPIRQDEKSC PYYMRTGSCK FGIACKFHHP QPASPGAGFP INGLAGSVIL  180
PSSGVPYAGG LATWSLPRAP YVSGPRLQTQ SYMPVVVSPS QSIIPAHGWS TYMGNMSPIS  240
SAGILGSTYA YNSMNPAESG SSGQVLLSST SASNFPERPD QPECRYYMNT GTCKYGSDCK  300
YHHPKERIVN SVENGIGPLG LPARPGQAVC SSYTMYGFCK YGPTCRFDHP YVGYPSNYGL  360
SLPLSVFDTS PLTYQRMSPT AHLSEAPLPS KLPDWARNTG SVSKKHQNLE TKNSDNPPER  420
ATSPQHSLRS SSKTSHD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04990.2	1e-130	C3H family protein