PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022771733.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

C3H

Protein Properties

Length: 371aa MW: 40276.4 Da PI: 9.0469

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022771733.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	37.1	5.3e-12	26	50	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +f++tGtCkyG++Ck++H++ XP_022771733.1 26 QPDCGYFLKTGTCKYGSTCKYHHPK 50 789********************96 PP
2	zf-CCCH	37.5	3.9e-12	72	95	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C++++rtG Ck+G CkF+H++ XP_022771733.1 72 KSCPYYMRTGSCKFGIACKFHHPQ 95 66********************97 PP
3	zf-CCCH	39.8	7.4e-13	214	239	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++Cr+++ tGtCkyG+ Ck++H++ XP_022771733.1 214 DQPECRYYMNTGTCKYGSDCKYHHPK 239 689*********************96 PP
4	zf-CCCH	30	9.2e-10	260	284	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+ + +G+CkyG++C+F H+ XP_022771733.1 260 GQAVCSSYTMYGFCKYGPTCRFDHP 284 7899********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence
MQCRINPLRT LKGGQYREEL PERVGQPDCG YFLKTGTCKY GSTCKYHHPK DRNGAGPVTL 60 NVLGLPIRQD EKSCPYYMRT GSCKFGIACK FHHPQPASPG AGFPINGLAG SVILPSSGVP 120 YAGGLATWSL PRAPYVSGPR LQTQSYMPVV VSPSQSIIPA HGWSTYMGNM SPISSAGILG 180 STYAYNSMNP AESGSSGQVL LSSTSASNFP ERPDQPECRY YMNTGTCKYG SDCKYHHPKE 240 RIVNSVENGI GPLGLPARPG QAVCSSYTMY GFCKYGPTCR FDHPYVGYPS NYGLSLPLSV 300 FDTSPLTYQR MSPTAHLSEA PLPSKLPDWA RNTGSVSKKH QNLETKNSDN PPERATSPQH 360 SLRSSSKTSH D

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence

MQCRINPLRT LKGGQYREEL PERVGQPDCG YFLKTGTCKY GSTCKYHHPK DRNGAGPVTL  60
NVLGLPIRQD EKSCPYYMRT GSCKFGIACK FHHPQPASPG AGFPINGLAG SVILPSSGVP  120
YAGGLATWSL PRAPYVSGPR LQTQSYMPVV VSPSQSIIPA HGWSTYMGNM SPISSAGILG  180
STYAYNSMNP AESGSSGQVL LSSTSASNFP ERPDQPECRY YMNTGTCKYG SDCKYHHPKE  240
RIVNSVENGI GPLGLPARPG QAVCSSYTMY GFCKYGPTCR FDHPYVGYPS NYGLSLPLSV  300
FDTSPLTYQR MSPTAHLSEA PLPSKLPDWA RNTGSVSKKH QNLETKNSDN PPERATSPQH  360
SLRSSSKTSH D

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04990.2	1e-100	C3H family protein