PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022772390.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

LSD

Protein Properties

Length: 145aa MW: 14959.4 Da PI: 7.6847

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022772390.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	35.9	1.2e-11	28	52	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C gCr+lL YP GA+sV+Ca+C++V XP_022772390.1 28 CCGCRNLLLYPVGATSVCCAVCNAV 52 99**********************9 PP
2	zf-LSD1	47.7	2.5e-15	67	91	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+tV XP_022772390.1 67 CGGCHTLLMYIRGATSVQCSCCNTV 91 ************************9 PP
3	zf-LSD1	41.9	1.6e-13	105	129	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA sV+Ca+C++V XP_022772390.1 105 CGNCRMLLMYQYGAQSVKCAVCNFV 129 ***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 145 aa Download sequence
MPAPLAPYPT PPAPYTPATN GSQSQLVCCG CRNLLLYPVG ATSVCCAVCN AVTAVPPPGT 60 EMAQLVCGGC HTLLMYIRGA TSVQCSCCNT VNLALEANQV AHVNCGNCRM LLMYQYGAQS 120 VKCAVCNFVT SVGGSASAAE QKFNS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.3	6e-65	LSD family protein