PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022776993.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

RAV

Protein Properties

Length: 359aa MW: 39959 Da PI: 8.7997

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022776993.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	44	5.6e-14	64	112	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ ++r++lg+f ++eAaka++ a+++++g XP_022776993.1 64 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAAKAYDIAAQRFRG 112 89**9888.8*****3.....5******99***********98 PP
2	B3	101.5	4.7e-32	193	293	1	96
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k+ tpsdv+k++rlv+pk++ae++ g+ + +++ l led +g++W+++++y+++s++yvltkGW++Fvk+++Lk+gD+v F+++ e+ XP_022776993.1 193 FEKAVTPSDVGKLNRLVIPKQHAEKYfplqsGIASSKGVLLNLEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFHRSTGPEK 287 89**************************98888899************************************************8766777 PP ..EEEE CS B3 91 elvvkv 96 +l++ + XP_022776993.1 288 QLYIDW 293 677766 PP

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence
MDGSCIDEST TSDSIAISVS TSNISPLPPV TKSPDSICRV GSGTSVIVDS EAGVEAESRK 60 LPSSKYKGVV PQPNGRWGAQ IYEKHQRVWL GTFNEEDEAA KAYDIAAQRF RGRDAVTNFK 120 HLQETEEDDI ETAFLNSHSK AEIVDMLRKH TYNDELEQSR RSYGFDGNGK RVVRTDAGFG 180 SLGLELKARE QLFEKAVTPS DVGKLNRLVI PKQHAEKYFP LQSGIASSKG VLLNLEDVTG 240 KVWRFRYSYW NSSQSYVLTK GWSRFVKEKN LKAGDIVSFH RSTGPEKQLY IDWKARTGLA 300 SGLEKPVGPV QMVRLFGVNI FKTPGSENAG LGGCHGKRTR EMELLEFECS KKQRVIDAL

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence

MDGSCIDEST TSDSIAISVS TSNISPLPPV TKSPDSICRV GSGTSVIVDS EAGVEAESRK  60
LPSSKYKGVV PQPNGRWGAQ IYEKHQRVWL GTFNEEDEAA KAYDIAAQRF RGRDAVTNFK  120
HLQETEEDDI ETAFLNSHSK AEIVDMLRKH TYNDELEQSR RSYGFDGNGK RVVRTDAGFG  180
SLGLELKARE QLFEKAVTPS DVGKLNRLVI PKQHAEKYFP LQSGIASSKG VLLNLEDVTG  240
KVWRFRYSYW NSSQSYVLTK GWSRFVKEKN LKAGDIVSFH RSTGPEKQLY IDWKARTGLA  300
SGLEKPVGPV QMVRLFGVNI FKTPGSENAG LGGCHGKRTR EMELLEFECS KKQRVIDAL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25560.1	1e-154	RAV family protein