PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022921347.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

MYB

Protein Properties

Length: 345aa MW: 39269.7 Da PI: 6.3184

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022921347.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.2	5.9e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l ++++ +G g+W+++++ g+ R++k+c++rw +yl XP_022921347.1 14 KGLWSPEEDEKLFNYITSFGVGCWSSVPKLAGLERCGKSCRLRWINYL 61 678*******************************************97 PP
2	Myb_DNA-binding	46.8	6.6e-15	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg ++++E++l++ +++ lG++ W+ Ia +++ gRt++++k++w++ XP_022921347.1 67 RGMFSQQEEDLIISLHEVLGNR-WAQIATRLP-GRTDNEIKNFWNS 110 788*****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence
MGRNSCCLKP KLRKGLWSPE EDEKLFNYIT SFGVGCWSSV PKLAGLERCG KSCRLRWINY 60 LRPDLKRGMF SQQEEDLIIS LHEVLGNRWA QIATRLPGRT DNEIKNFWNS CLKKKLMKQG 120 IDPITHKPLE DNMEAMKDQK PREEVPHLLQ GNVSNITISS EASILNDSNH YFKQTEDSSQ 180 HFVNKIEFDS LSSYLGGEYN NNSQFTAAEY QYNNTFYSNS SMGMPSYTSS EHGNMSRTDF 240 SENSGSGFSC FFMNEVKESS SNSSVMSNYS GYQNSGGFSW ESENKLEKLL QFETNQMKNM 300 GLKGSTEEET KNIETRMNSA SFGSYPLMSM SENERGGSFG VFHHI

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence

MGRNSCCLKP KLRKGLWSPE EDEKLFNYIT SFGVGCWSSV PKLAGLERCG KSCRLRWINY  60
LRPDLKRGMF SQQEEDLIIS LHEVLGNRWA QIATRLPGRT DNEIKNFWNS CLKKKLMKQG  120
IDPITHKPLE DNMEAMKDQK PREEVPHLLQ GNVSNITISS EASILNDSNH YFKQTEDSSQ  180
HFVNKIEFDS LSSYLGGEYN NNSQFTAAEY QYNNTFYSNS SMGMPSYTSS EHGNMSRTDF  240
SENSGSGFSC FFMNEVKESS SNSSVMSNYS GYQNSGGFSW ESENKLEKLL QFETNQMKNM  300
GLKGSTEEET KNIETRMNSA SFGSYPLMSM SENERGGSFG VFHHI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26660.1	4e-81	MYB family protein