PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022921393.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

TCP

Protein Properties

Length: 389aa MW: 41328.5 Da PI: 7.637

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022921393.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	129.6	3.1e-40	67	183	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg....... 88 ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ s + XP_022921393.1 67 PAKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSTMSVPsqlrsss 161 689******************************************************************99988888888888666665444444 PP TCP 89 .....................k 89 + XP_022921393.1 162 yynpnfslhqprrtlfpgfglS 183 4555555555544444444441 PP

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence
MEGGDDLHHH HHHHRPTFPF QLLEKKDDDA ASCSTSPYPS LAISPDPTTA AAAATVSVAE 60 PSSKKPPAKR TSTKDRHTKV DGRGRRIRMP ALCAARVFQL TRELGHKSDG ETIEWLLQQA 120 EPAVIAATGT GTIPANFTSL NISLRSSGST MSVPSQLRSS SYYNPNFSLH QPRRTLFPGF 180 GLSSEPSSTA LLNFQSTNIG NSLLQAKPEL RDNTTSSLDL SDAAEEISIG RKRRPSTEQE 240 LSSSSSSQHQ MGGYLLQSSA GSIPASHGGG QVPANFWMLT NTNNQVMGGD PIWTFPSVNN 300 SGLYRGTMSS GLHFMNFPAP VALVPGQQFG SGAGGGNNSS SEGHLNILAG LNPYRSVSTT 360 GIMEQQGSGS HSHHGGGGDD RHDSTSHHS

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence

MEGGDDLHHH HHHHRPTFPF QLLEKKDDDA ASCSTSPYPS LAISPDPTTA AAAATVSVAE  60
PSSKKPPAKR TSTKDRHTKV DGRGRRIRMP ALCAARVFQL TRELGHKSDG ETIEWLLQQA  120
EPAVIAATGT GTIPANFTSL NISLRSSGST MSVPSQLRSS SYYNPNFSLH QPRRTLFPGF  180
GLSSEPSSTA LLNFQSTNIG NSLLQAKPEL RDNTTSSLDL SDAAEEISIG RKRRPSTEQE  240
LSSSSSSQHQ MGGYLLQSSA GSIPASHGGG QVPANFWMLT NTNNQVMGGD PIWTFPSVNN  300
SGLYRGTMSS GLHFMNFPAP VALVPGQQFG SGAGGGNNSS SEGHLNILAG LNPYRSVSTT  360
GIMEQQGSGS HSHHGGGGDD RHDSTSHHS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47620.1	3e-68	TCP family protein