PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022921395.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

MYB

Protein Properties

Length: 399aa MW: 43755.6 Da PI: 6.4278

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022921395.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.1	8.3e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +++++G g+W++ +++ g+ R++k+c++rw +yl XP_022921395.1 14 KGPWTPEEDQKLLAYIEEHGHGSWRALPSKAGLQRCGKSCRLRWINYL 61 79********************************************97 PP
2	Myb_DNA-binding	52.8	9e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l XP_022921395.1 67 RGKFSLQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence
MGRSPCCDKV GLKKGPWTPE EDQKLLAYIE EHGHGSWRAL PSKAGLQRCG KSCRLRWINY 60 LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIATHLPKRT DNEIKNYWNT HLKKRLAKMG 120 IDPVTHKPKN DALLTGDGQP KCAANLSHIA QWESARLEAE ARLVRESRLR NNNSHSSLQQ 180 LPNPPCFPPS SSSTSTSAQL LPNSDSPAAM ASRSLEALKA WNNGWSKSAE GTGGILTRGI 240 GGDLESPTST LTFSENVLPV MATGCGEGEN SAAMIEFVGS SSSCEREWKE EGFGNSSQLP 300 EYKEGFENSM SFTSHDMTLS IEATWTAESL RTKEAIAEEG FTNLLLNNKV ERSQSEGGGG 360 EDSENGSGSA ASDYYEDNKN YWNSILNLVN SSPSNSSIF

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence

MGRSPCCDKV GLKKGPWTPE EDQKLLAYIE EHGHGSWRAL PSKAGLQRCG KSCRLRWINY  60
LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIATHLPKRT DNEIKNYWNT HLKKRLAKMG  120
IDPVTHKPKN DALLTGDGQP KCAANLSHIA QWESARLEAE ARLVRESRLR NNNSHSSLQQ  180
LPNPPCFPPS SSSTSTSAQL LPNSDSPAAM ASRSLEALKA WNNGWSKSAE GTGGILTRGI  240
GGDLESPTST LTFSENVLPV MATGCGEGEN SAAMIEFVGS SSSCEREWKE EGFGNSSQLP  300
EYKEGFENSM SFTSHDMTLS IEATWTAESL RTKEAIAEEG FTNLLLNNKV ERSQSEGGGG  360
EDSENGSGSA ASDYYEDNKN YWNSILNLVN SSPSNSSIF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15310.1	1e-106	MYB family protein