PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022921599.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

CO-like

Protein Properties

Length: 367aa MW: 42998.1 Da PI: 6.4625

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022921599.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	24.2	6.8e-08	22	64	3	39
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +r+C+ + k++++fC ++ +lC+ C ++ H+ H++ XP_022921599.1 22 ARVCDACLCKRAHWFCAADDAFLCQACDVSVHSAnqlarrHDR 64 689*****************************65677777776 PP
2	CCT	67.7	3.1e-23	319	362	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirY++RK +Ae+RpR+KGrFvk++ XP_022921599.1 319 REARVSRYREKRRTRLFSKKIRYQVRKLNAEKRPRMKGRFVKRT 362 9*****************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence
MLRSERKAAP EAAAAMMAGR TARVCDACLC KRAHWFCAAD DAFLCQACDV SVHSANQLAR 60 RHDRIRLETA SLKSTHQAQA QSQPHLPPWL KGFTRKARTP RPNKQISSTK ASVFSLVPEI 120 SNDEGFSIDD NEDEHRQFHH HHHHQQVPVF DPLFDDEKFS LTHELDDFGD GFLPSEVDLA 180 EFVADVENLL VRQEQEQEQK QKQEHDRTTI LKVKDEKEEE EELVQDWNFK GEEIEEEEIN 240 KVEDEVKAFE QELKVKKKIK KKNIFLRLNY DAIITAWDTQ SSPYTTGDRP EYDLDDCWEE 300 EWGLHENGER GGWRNDGERE ARVSRYREKR RTRLFSKKIR YQVRKLNAEK RPRMKGRFVK 360 RTATPLC

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence

MLRSERKAAP EAAAAMMAGR TARVCDACLC KRAHWFCAAD DAFLCQACDV SVHSANQLAR  60
RHDRIRLETA SLKSTHQAQA QSQPHLPPWL KGFTRKARTP RPNKQISSTK ASVFSLVPEI  120
SNDEGFSIDD NEDEHRQFHH HHHHQQVPVF DPLFDDEKFS LTHELDDFGD GFLPSEVDLA  180
EFVADVENLL VRQEQEQEQK QKQEHDRTTI LKVKDEKEEE EELVQDWNFK GEEIEEEEIN  240
KVEDEVKAFE QELKVKKKIK KKNIFLRLNY DAIITAWDTQ SSPYTTGDRP EYDLDDCWEE  300
EWGLHENGER GGWRNDGERE ARVSRYREKR RTRLFSKKIR YQVRKLNAEK RPRMKGRFVK  360
RTATPLC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	330	346	RRTRLFSKKIRYQVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68520.1	1e-36	CO-like family protein