PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022921600.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

LBD

Protein Properties

Length: 241aa MW: 26373.4 Da PI: 8.5618

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022921600.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	91.2	1.3e-28	4	107	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C+++C ++p++ p++q++++ +++k++G++ +l+l++a p++ r+++++sl++eA+ r+ +P+ G++g+++++++ql+q XP_022921600.1 4 SCNGCRVLRKGCSESCSIRPCLqwiktPQSQANATFFLAKFYGRAGLLNLINAGPDHLRPAIFKSLLFEACGRIVNPIFGSAGLLWSGSWQLCQD 98 6******************************************************************************************** PP DUF260 91 kaelallke 99 ++e++l ++ XP_022921600.1 99 AVEAVLNGA 107 9988766 PP

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence
MRMSCNGCRV LRKGCSESCS IRPCLQWIKT PQSQANATFF LAKFYGRAGL LNLINAGPDH 60 LRPAIFKSLL FEACGRIVNP IFGSAGLLWS GSWQLCQDAV EAVLNGAPIP PVSYEMATSH 120 MGPPLKGCDI RHVSKQQGSG LSEIKKRRRF KRKPKPKEEP VMLPQFVVDG STRISSEPRC 180 FTFELDNLEG HVSPEKVCGS NDTECLSVET TEASSVGQGG GVELELTLGF GHGRMLTCKE 240 R

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	145	152	KKRRRFKR
2	147	153	RRRFKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	3e-80	LBD family protein