PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022921860.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

MYB

Protein Properties

Length: 999aa MW: 112917 Da PI: 6.3246

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022921860.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.1	2e-08	382	427	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r++WTt Ed+ l+ ++q G ++W a +g++Rt+ qc sr+q XP_022921860.1 382 RNSWTTSEDKNLLFTIQQKGLNNWIELAVSLGTNRTPFQCLSRYQR 427 789*****************************************96 PP
2	Myb_DNA-binding	45.6	1.6e-14	435	479	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 + WT++Ed++l av+ +G g+W ++a+t+ gRt+ qc +rw k XP_022921860.1 435 KSEWTKDEDDKLRSAVAIFGEGDWQAVASTLE-GRTGPQCSNRWKK 479 578***************************.*********98 PP
3	Myb_DNA-binding	34.9	3.6e-11	488	533	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg +T++Ed +l+ av ++G+++W++ a+ ++ gR qc++rw++ XP_022921860.1 488 RGYFTPDEDSRLKIAVLLFGPKNWNKKAEFLP-GRNQVQCRERWFNC 533 799***************************.*********996 PP
4	Myb_DNA-binding	48.7	1.7e-15	540	584	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r WT+eEd++l a++++G W+++a++++ Rt+++c+ rw k+ XP_022921860.1 540 RCEWTEEEDLRLEIAIQEHGYS-WAKVAACVP-SRTDNECRRRWKKL 584 568***************99.*****.*********997 PP

Sequence ? help Back to Top
Protein Sequence Length: 999 aa Download sequence
MSRRSHVDGG DKELPASEED DEDDLVDDDM ETLRRACRLA GVNHEDSINP RLSLPAAGDA 60 NLGSDSDDVD DLELLRNIQN RFSTAADEQP LSILPPVTAD EEEDDFETLR SIQRRFAAYE 120 SDILSNKPDQ SCDLDGPLKM DSDNTDVARL TSSERSSMIA FEKGSLPKAA LAFIDAIKKN 180 RSQQKFIRSK MIHLEARIEE NKKLRKRFKV LKGFQGSCRR KTTCALTQMV DPRVQLISAG 240 KPQAKDSSKK DKRLSAMCYG PAENSHVACY RTALTKFHPV DRKRWSNFER ENLGKGIRQQ 300 FQEMVLQISV DQISEIQGFS AESDDLDNIL ASIKGLDITP EKIREFLPKV NWDKLAFMYL 360 QGRSGAECEA RWLNFEDPLI NRNSWTTSED KNLLFTIQQK GLNNWIELAV SLGTNRTPFQ 420 CLSRYQRSLN ASILKSEWTK DEDDKLRSAV AIFGEGDWQA VASTLEGRTG PQCSNRWKKS 480 LDPARTKRGY FTPDEDSRLK IAVLLFGPKN WNKKAEFLPG RNQVQCRERW FNCLDPSLRR 540 CEWTEEEDLR LEIAIQEHGY SWAKVAACVP SRTDNECRRR WKKLFPNQVP LLQEARKIQK 600 VALISNFVDR ESERPALGPT DFRPVPNSHL LCNTDDPETA PKRNVRMRRM PVSRNEKSAN 660 GDAPKKMKSN NQRNQADETA QVDFANNTSS VPEVKSTKPQ RKRTRHGAYT TRRKGAPKIG 720 CNSERCAEQN SDTRSLEVQL NCKEPAERIN SDCPETVDEN GMEVFENKAA EMHSEGVVCF 780 SEQEENQNST GSSGVSVLSE MTNDMDEYNP STPPDTTLLA SITADDIIET KGVNVADKDL 840 DDSNSFSLPQ SCLELRTTDS EGVDSYSVDE FTDKSHGVCK PQGRRKKNSK RSNKSQDSLV 900 SCQQAELEMS GMNELHRCNQ SKKRKHSGTN TSPLGTMEAV EEVDDCTLQG FLQKRLKRTT 960 TTHDKKVDGS SSTPPEVDND DNDPTLALLL KDKLKRKKH

Sequence ? help Back to Top

Protein Sequence Length: 999 aa Download sequence

MSRRSHVDGG DKELPASEED DEDDLVDDDM ETLRRACRLA GVNHEDSINP RLSLPAAGDA  60
NLGSDSDDVD DLELLRNIQN RFSTAADEQP LSILPPVTAD EEEDDFETLR SIQRRFAAYE  120
SDILSNKPDQ SCDLDGPLKM DSDNTDVARL TSSERSSMIA FEKGSLPKAA LAFIDAIKKN  180
RSQQKFIRSK MIHLEARIEE NKKLRKRFKV LKGFQGSCRR KTTCALTQMV DPRVQLISAG  240
KPQAKDSSKK DKRLSAMCYG PAENSHVACY RTALTKFHPV DRKRWSNFER ENLGKGIRQQ  300
FQEMVLQISV DQISEIQGFS AESDDLDNIL ASIKGLDITP EKIREFLPKV NWDKLAFMYL  360
QGRSGAECEA RWLNFEDPLI NRNSWTTSED KNLLFTIQQK GLNNWIELAV SLGTNRTPFQ  420
CLSRYQRSLN ASILKSEWTK DEDDKLRSAV AIFGEGDWQA VASTLEGRTG PQCSNRWKKS  480
LDPARTKRGY FTPDEDSRLK IAVLLFGPKN WNKKAEFLPG RNQVQCRERW FNCLDPSLRR  540
CEWTEEEDLR LEIAIQEHGY SWAKVAACVP SRTDNECRRR WKKLFPNQVP LLQEARKIQK  600
VALISNFVDR ESERPALGPT DFRPVPNSHL LCNTDDPETA PKRNVRMRRM PVSRNEKSAN  660
GDAPKKMKSN NQRNQADETA QVDFANNTSS VPEVKSTKPQ RKRTRHGAYT TRRKGAPKIG  720
CNSERCAEQN SDTRSLEVQL NCKEPAERIN SDCPETVDEN GMEVFENKAA EMHSEGVVCF  780
SEQEENQNST GSSGVSVLSE MTNDMDEYNP STPPDTTLLA SITADDIIET KGVNVADKDL  840
DDSNSFSLPQ SCLELRTTDS EGVDSYSVDE FTDKSHGVCK PQGRRKKNSK RSNKSQDSLV  900
SCQQAELEMS GMNELHRCNQ SKKRKHSGTN TSPLGTMEAV EEVDDCTLQG FLQKRLKRTT  960
TTHDKKVDGS SSTPPEVDND DNDPTLALLL KDKLKRKKH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	884	925	RRKKNSKRSNKSQDSLVSCQQAELEMSGMNELHRCNQSKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18100.1	0.0	MYB family protein