PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022921892.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

Trihelix

Protein Properties

Length: 903aa MW: 99941.5 Da PI: 8.0641

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022921892.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	64.3	2.6e-20	811	890	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 +W+ +e+++Li++r ++++r++ +k +++lWee+s m + g++rsp qCk+ w +l +++++ ++ekk s+++py+d++ XP_022921892.1 811 KWKPEEIKKLIQLRGKLHDRFQVAKGRMALWEEISTSMLADGINRSPGQCKSLWASLVVKFEQESKSEKK-----SKSWPYWDEM 890 7******************************************************************8.....678***99 PP

Sequence ? help Back to Top
Protein Sequence Length: 903 aa Download sequence
MQLEFLGGSS VLSSPHSAPY KQRMASFGAL SLCPCSPLSR PHQTVRTIYC CRGSPTVLGK 60 NVSKEHRKRP GRLEGAKRSM EDSVQRKMEQ FYEGSDGPPL RVLPIGGLGE IGMNCMLVGN 120 YDRYILIDAG VMFPDHDELG VQKIIPDTTF IRRWSHKIEA VVITHGHEDH IGALPWVIPA 180 LDSHTPIFAS SFTVELIKKR LKENGIFIPS RLKVFKMKRR FTAGPFEIEP IRVTHSIPDC 240 CGLVLRCADG TIFHTGDWKI DESPLDGKVF DRETLEQLSK EGVTLMMSDS TNVLSPGRTI 300 SESVVADALL RRISAAKGRV ITTQFASNIH RLGSVKAAAD LTGRKLVFVG MSLRTYLDAA 360 WKDGKAPIDP STLVKVEDID AYAPKDLLIV TTGSQAEPRA ALNLASYGSS HSLKLSKEDM 420 ILYSAKVIPG NESRVMKMLN RISEIGSNII MGKNELLHTS GHGYRGELEE VLQIVKPQHF 480 LPIHGELLFL KEHELLGRST GIRHTTVIKN GEMLGVSHLR NRRVLSNGFT SLGMENLQLK 540 YSDGDKAFGS SSELFVDERL KIATDGIIVV SMEILRPLSV DGLNETGIRG KLRITTRCLW 600 LDKGKLLDAL HKAAHAALSS CPVNCPLAHM ERTVSELLRK MVRKYSGKRP EVIVMAVENP 660 GGVLTEELGT RLSGKSNTGI GIPALRKAVD GQPTKSHLNS IKPNGNDDLH SEDNSSQESQ 720 GYIEPGRLLP EEDYVPSNST EMNSFDNEGL EDFWRPFITP TSPATELAKD NEGSVQQSKN 780 TLEITNEGEE VGDDKSVKTS NSDVKPVKRN KWKPEEIKKL IQLRGKLHDR FQVAKGRMAL 840 WEEISTSMLA DGINRSPGQC KSLWASLVVK FEQESKSEKK SKSWPYWDEM SGILSDSEDV 900 ATE

Sequence ? help Back to Top

Protein Sequence Length: 903 aa Download sequence

MQLEFLGGSS VLSSPHSAPY KQRMASFGAL SLCPCSPLSR PHQTVRTIYC CRGSPTVLGK  60
NVSKEHRKRP GRLEGAKRSM EDSVQRKMEQ FYEGSDGPPL RVLPIGGLGE IGMNCMLVGN  120
YDRYILIDAG VMFPDHDELG VQKIIPDTTF IRRWSHKIEA VVITHGHEDH IGALPWVIPA  180
LDSHTPIFAS SFTVELIKKR LKENGIFIPS RLKVFKMKRR FTAGPFEIEP IRVTHSIPDC  240
CGLVLRCADG TIFHTGDWKI DESPLDGKVF DRETLEQLSK EGVTLMMSDS TNVLSPGRTI  300
SESVVADALL RRISAAKGRV ITTQFASNIH RLGSVKAAAD LTGRKLVFVG MSLRTYLDAA  360
WKDGKAPIDP STLVKVEDID AYAPKDLLIV TTGSQAEPRA ALNLASYGSS HSLKLSKEDM  420
ILYSAKVIPG NESRVMKMLN RISEIGSNII MGKNELLHTS GHGYRGELEE VLQIVKPQHF  480
LPIHGELLFL KEHELLGRST GIRHTTVIKN GEMLGVSHLR NRRVLSNGFT SLGMENLQLK  540
YSDGDKAFGS SSELFVDERL KIATDGIIVV SMEILRPLSV DGLNETGIRG KLRITTRCLW  600
LDKGKLLDAL HKAAHAALSS CPVNCPLAHM ERTVSELLRK MVRKYSGKRP EVIVMAVENP  660
GGVLTEELGT RLSGKSNTGI GIPALRKAVD GQPTKSHLNS IKPNGNDDLH SEDNSSQESQ  720
GYIEPGRLLP EEDYVPSNST EMNSFDNEGL EDFWRPFITP TSPATELAKD NEGSVQQSKN  780
TLEITNEGEE VGDDKSVKTS NSDVKPVKRN KWKPEEIKKL IQLRGKLHDR FQVAKGRMAL  840
WEEISTSMLA DGINRSPGQC KSLWASLVVK FEQESKSEKK SKSWPYWDEM SGILSDSEDV  900
ATE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63420.1	0.0	Trihelix family protein