PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022921903.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

RAV

Protein Properties

Length: 355aa MW: 40473.1 Da PI: 8.4537

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022921903.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	31.9	3.2e-10	40	87	1	54
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 s++kGV +g W A+I+ + r++lg+f +++eAa a++ a+ +++ XP_022921903.1 40 SKFKGVVLQQ-NGHWGAQIYA------NhHRIWLGTFKSEDEAAMAYDSAAIRIR 87 79**9887.8**999......44******99********9987 PP
2	B3	85.7	4.1e-27	162	261	1	87
EEEE-..-HHHHTT-EE--HHH.HTT.............---.....--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.............ggkke...esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 f+k+ltpsdv+k++rlv+pkk+a ++ ++++l++ d+ r+W+++++y+k+s++yv+t+GW++Fvk+++Lk++D+ XP_022921903.1 162 FQKELTPSDVGKLNRLVIPKKYAVKYfpqipastidnvkR---VdddCDVQLVFFDKMMRQWKFRYCYWKSSQSYVFTRGWNRFVKEKQLKANDT 253 99***********************9998888866663...0444999***************************************** PP EEEEE-SS CS B3 80 vvFkldgr 87 + F+l + XP_022921903.1 254 IAFYLCEA 261 **8643 PP

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence
MKQELLSMML KARTNAIGED CITLPFPASE CSRQGKSLTS KFKGVVLQQN GHWGAQIYAN 60 HHRIWLGTFK SEDEAAMAYD SAAIRIRSGD CHRNFPWTKF TIEEPNFQNL YTTEALLSML 120 KDGSYRTKFA EYLRDCLESV QTASPSAEKL HDNGRTSIKQ LFQKELTPSD VGKLNRLVIP 180 KKYAVKYFPQ IPASTIDNVK RVDDDCDVQL VFFDKMMRQW KFRYCYWKSS QSYVFTRGWN 240 RFVKEKQLKA NDTIAFYLCE AAKASDANTT FCVVDVKNRN SYSLTENEIT SSEMQLDLSR 300 EEVNGPVSPK HVDDELKDDL EVSGFKLFGV HIKGKFAGQC FSLPRSAATG FPGLI

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence

MKQELLSMML KARTNAIGED CITLPFPASE CSRQGKSLTS KFKGVVLQQN GHWGAQIYAN  60
HHRIWLGTFK SEDEAAMAYD SAAIRIRSGD CHRNFPWTKF TIEEPNFQNL YTTEALLSML  120
KDGSYRTKFA EYLRDCLESV QTASPSAEKL HDNGRTSIKQ LFQKELTPSD VGKLNRLVIP  180
KKYAVKYFPQ IPASTIDNVK RVDDDCDVQL VFFDKMMRQW KFRYCYWKSS QSYVFTRGWN  240
RFVKEKQLKA NDTIAFYLCE AAKASDANTT FCVVDVKNRN SYSLTENEIT SSEMQLDLSR  300
EEVNGPVSPK HVDDELKDDL EVSGFKLFGV HIKGKFAGQC FSLPRSAATG FPGLI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50680.1	1e-102	RAV family protein