PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022921956.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

SBP

Protein Properties

Length: 546aa MW: 59847.7 Da PI: 7.5354

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022921956.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	134.4	3.5e-42	171	247	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 Cqv gC++dls+ k+yh+rhkvCevhsk+++v+v+g+eqrfCqqCsrfh l efD++krsCr+rLa+hnerrrk+q XP_022921956.1 171 CQVYGCNKDLSSSKDYHKRHKVCEVHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQV 247 **************************************************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 546 aa Download sequence
MESWSYVSEG KGCMSDELNS PTSSLARNKD SLLGWEFKHP CNFGSTMLPT GQHVDNQGFG 60 EFIFPEMIGK QLADNSVCDI LSSKVVGGRY LNPSNAYLGE DESTSKLSGS VVDSTSRDSS 120 FIDLKLGRFA DHREAHGYKF FKGAPILASS ESSMPSKRVR ASGLNSQTYF CQVYGCNKDL 180 SSSKDYHKRH KVCEVHSKTA KVIVNGIEQR FCQQCSRFHL LAEFDDGKRS CRKRLAGHNE 240 RRRKPQVAIN SGRAGRFLQS YNGSRLQGTA LTATSFICQG ILPNGILNTE KYGASDWCRT 300 VKIEDKNEYM PLSAVHAPSA HLHSKSLFSP YDIDTQVPPF HDNEPNPSAT NMFKENSNQY 360 PLSVGGVNSS SRSYFHNPSL GSEYFSVYSA ASTDRLSGLS DSGCALSLLS SQTQNSSTHS 420 SGIPIGRPMV LLDGQNHYSM SQLSEKLMGV SSHVSVNGVS NKFDSSGLNA SEGCTLGPIS 480 TPETSDAVNL EITNRIFHES NLADPCEGGP TIDLLQLSSQ LHRVEHQRQA MQVKQESNAF 540 CCLRIT

Sequence ? help Back to Top

Protein Sequence Length: 546 aa Download sequence

MESWSYVSEG KGCMSDELNS PTSSLARNKD SLLGWEFKHP CNFGSTMLPT GQHVDNQGFG  60
EFIFPEMIGK QLADNSVCDI LSSKVVGGRY LNPSNAYLGE DESTSKLSGS VVDSTSRDSS  120
FIDLKLGRFA DHREAHGYKF FKGAPILASS ESSMPSKRVR ASGLNSQTYF CQVYGCNKDL  180
SSSKDYHKRH KVCEVHSKTA KVIVNGIEQR FCQQCSRFHL LAEFDDGKRS CRKRLAGHNE  240
RRRKPQVAIN SGRAGRFLQS YNGSRLQGTA LTATSFICQG ILPNGILNTE KYGASDWCRT  300
VKIEDKNEYM PLSAVHAPSA HLHSKSLFSP YDIDTQVPPF HDNEPNPSAT NMFKENSNQY  360
PLSVGGVNSS SRSYFHNPSL GSEYFSVYSA ASTDRLSGLS DSGCALSLLS SQTQNSSTHS  420
SGIPIGRPMV LLDGQNHYSM SQLSEKLMGV SSHVSVNGVS NKFDSSGLNA SEGCTLGPIS  480
TPETSDAVNL EITNRIFHES NLADPCEGGP TIDLLQLSSQ LHRVEHQRQA MQVKQESNAF  540
CCLRIT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	5e-49	SBP family protein