PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022922073.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

LBD

Protein Properties

Length: 241aa MW: 26978.6 Da PI: 8.8286

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022922073.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	142.6	1.3e-44	68	166	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrrkC ++C++apyfp e+p+kfanvhk+FGasnv+kll++l +++reda++sl+yeAear+rdPvyG+vg i+ lq+q+++l++el+ XP_022922073.1 68 PCAACKFLRRKCMSGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELD 162 7*********************************************************************************************9 PP DUF260 96 llke 99 ++++ XP_022922073.1 163 AANA 166 9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence
MSHLLHLNCR ILKPVFVAAL HATYFLLNLH SEKEKEKKNR NKETVYATSF KRIQREGRMA 60 SSSSYNSPCA ACKFLRRKCM SGCIFAPYFP PEEPQKFANV HKIFGASNVT KLLNELLPHQ 120 REDAVNSLAY EAEARVRDPV YGCVGAISFL QRQVQRLQKE LDAANADLIR YACNEIPNAG 180 VSHVVQPSPG ARPRALDQFH TSSSTGYYNQ HLPAFPMAYP LPWNENSPGN DINEGGGDGN 240 I

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63090.2	1e-74	LBD family protein