PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022922118.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family RAV
Protein Properties Length: 324aa    MW: 36007.8 Da    PI: 9.9408
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022922118.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.69.9e-114593155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    s++kGV   + +grW A+I++      ++r++lg+f  +  Aa a++ a+++++g
  XP_022922118.1 45 SRFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNQEHHAANAYDIAALRFRG 93
                    689***9788.8*********3.....5**********99*************98 PP
2B396.61.6e-30168259187
                     EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                     f+k+ tpsdv+k++rlv+pk++ae++     g  + +++ l led  g++W+++++y+++s++yvltkGW++Fvk++ L++gD+v F ++  
  XP_022922118.1 168 FEKTVTPSDVGKLNRLVIPKQHAEKNfpmgeGVGSGKGMLLNLEDMGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKSLRAGDVVRFLRSTG 259
                     99**************************9995555689*************************************************96543 PP
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    
MDASSIDESR GSDSTSISPV TPLLFHSSPA PGMPHEAESR KLPSSRFKGV VPQPNGRWGA  60
QIYEKHQRVW LGTFNQEHHA ANAYDIAALR FRGRDAVTNF KSLDDEDDKD AMEGEFLNSH  120
SKLEIVDMLR KHTYNEELEQ SKRQRGAIAA ANTAVHHSGV DSKREVLFEK TVTPSDVGKL  180
NRLVIPKQHA EKNFPMGEGV GSGKGMLLNL EDMGGKVWRF RYSYWNSSQS YVLTKGWSRF  240
VKEKSLRAGD VVRFLRSTGA DKQLYIDGKA TSEGGVKAVH VVKLFGVNIL EVPLPVGRCG  300
GEPKNQGVLL ELQPSKKQRI IKAL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.11e-126RAV family protein