PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022922528.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family MIKC_MADS
Protein Properties Length: 216aa    MW: 24387.9 Da    PI: 8.3316
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022922528.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF79.81.8e-25959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+i+n   rqvtfskRr g++KKA+EL +LCda++a+i+fs +gkl++yss
  XP_022922528.1  9 KKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSS 59
                    689**********************************************96 PP
2K-box53.88.5e-19891682099
           K-box  20 elakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                       a+L++e     +e+Rh++Ge+Le+L ++eL+qLe+ Le +l+++ ++K+e +l++ie  ++ke  l +en++Lr+++ 
  XP_022922528.1  89 VCANLREEFAAKTKELRHMKGEELEELGIEELKQLEKLLEIGLNRVIETKDEKFLKEIEAVKEKEALLTKENQRLRNQVR 168
                     5678999999999***************************************************************9985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    
MTRQKIQIKK IDNIAARQVT FSKRRRGLFK KAHELATLCD ADIALIVFSA SGKLFDYSSS  60
SMHELLGRHN KLPEVNNFCQ PLFQMEKSVC ANLREEFAAK TKELRHMKGE ELEELGIEEL  120
KQLEKLLEIG LNRVIETKDE KFLKEIEAVK EKEALLTKEN QRLRNQVRAL NRDEQEQQAV  180
GVGGSSLGSK SITSNSSSSP NPSSQDCDDI SLKLGL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.12e-42MIKC_MADS family protein