PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022922550.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family MIKC_MADS
Protein Properties Length: 214aa    MW: 24741.3 Da    PI: 8.2335
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022922550.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.71.7e-292271150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    +rienk nrqvtfskRrng+lKKA ELSvLCd++va+i+fss+gkl+e+ 
  XP_022922550.1 22 ERIENKVNRQVTFSKRRNGLLKKACELSVLCDVDVALIMFSSRGKLFEFG 71
                    69**********************************************95 PP
2K-box84.81.8e-2894183899
           K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                     +l++++     +e++kL++++e+Lqr++R+l+Ge+Le Ls+keL+ Le+qL+k l++ R +K e++l++i +++k+e+el + n++L++k+e
  XP_022922550.1  94 NLHHTHV--QIEEVSKLRAKYESLQRSHRNLVGEELEALSIKELHTLEKQLDKTLSQTRHRKVEIMLQKIADTRKMEQELGDVNTQLKSKVE 183
                     3333333..3699****************************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    
MYQLSIFRGK RDKHGKGKVV VERIENKVNR QVTFSKRRNG LLKKACELSV LCDVDVALIM  60
FSSRGKLFEF GSTDMNKILE RYHHRCYNTG STTNLHHTHV QIEEVSKLRA KYESLQRSHR  120
NLVGEELEAL SIKELHTLEK QLDKTLSQTR HRKVEIMLQK IADTRKMEQE LGDVNTQLKS  180
KVEGQECMQQ NEEQEEEEEG AMLAGSSLIP DCVL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.11e-64MIKC_MADS family protein