PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022922711.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

MYB

Protein Properties

Length: 646aa MW: 74087.1 Da PI: 8.1682

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022922711.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.6	2.5e-07	460	499	3	39
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkq 39 +W+++E ell ++v ++++g +W+ I+ ++g+ R+ ++ XP_022922711.1 460 PWSKDEIELLRKGVLKYPKGtsrRWEVISDYIGTQRSVEE 499 8********************************8898876 PP
2	Myb_DNA-binding	25.8	2.5e-08	589	634	3	46
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 W++ + lv+a k ++++ +W+++a+ ++ g+t +qck ++ + XP_022922711.1 589 DWSAIQERALVQALKTFPKEtsqRWERVAAAIP-GKTVNQCKKKFTS 634 699999*************************.*******9865 PP

Sequence ? help Back to Top
Protein Sequence Length: 646 aa Download sequence
MTVQANLRLL TYSQEIIDGQ PIYVSSNSLP VKALNYEPAG HAFHDVVLKL LGYEDNEVSD 60 DNEQTAEDAE RKYAPSFDSY SSKGKKKSGG STQQDHYALL GLSHLRYLAT EEQIRKSYRE 120 TALKYHPDKQ AALLLAEETE AAKQAKKDEI ESHFKSIQEA YEVLIDPVKR RIYDSTDEFD 180 DEIPTDCAVQ DFFTVFGPAF MRNGRWSVNQ SVPSLGDDKT PLKEVDDFYN FWYTFKSWRE 240 FPHADEFDLE QAESRDHKRW MERQNAKLTE KARKEENARI RTLVDNAYKR DPRIQRRKEE 300 EKAEKQRKKE AKFLAKKLQE EEAIRLAEEE KRRKEEEEKR AAQVAQQQKK VKEKEKKLLR 360 KERSRLRTLS GPVISQSLLD LSEENVENLC SSLDIEQLRN ICDKMEGKTG MELAKVLWDA 420 QESSHSDRKH QECNKTAQQN GSTAANVTIP LSNLQKKERP WSKDEIELLR KGVLKYPKGT 480 SRRWEVISDY IGTQRSVEEI LKATKTILLQ KPDSAKAFDS FLEKRKPAQA IASPLSTREE 540 LVGVSSKKPE DNVAINGNLD VPSVGQNVNN QTPSDSSANG IPSTSEQDDW SAIQERALVQ 600 ALKTFPKETS QRWERVAAAI PGKTVNQCKK KFTSMKESFR NKKNAA

Sequence ? help Back to Top

Protein Sequence Length: 646 aa Download sequence

MTVQANLRLL TYSQEIIDGQ PIYVSSNSLP VKALNYEPAG HAFHDVVLKL LGYEDNEVSD  60
DNEQTAEDAE RKYAPSFDSY SSKGKKKSGG STQQDHYALL GLSHLRYLAT EEQIRKSYRE  120
TALKYHPDKQ AALLLAEETE AAKQAKKDEI ESHFKSIQEA YEVLIDPVKR RIYDSTDEFD  180
DEIPTDCAVQ DFFTVFGPAF MRNGRWSVNQ SVPSLGDDKT PLKEVDDFYN FWYTFKSWRE  240
FPHADEFDLE QAESRDHKRW MERQNAKLTE KARKEENARI RTLVDNAYKR DPRIQRRKEE  300
EKAEKQRKKE AKFLAKKLQE EEAIRLAEEE KRRKEEEEKR AAQVAQQQKK VKEKEKKLLR  360
KERSRLRTLS GPVISQSLLD LSEENVENLC SSLDIEQLRN ICDKMEGKTG MELAKVLWDA  420
QESSHSDRKH QECNKTAQQN GSTAANVTIP LSNLQKKERP WSKDEIELLR KGVLKYPKGT  480
SRRWEVISDY IGTQRSVEEI LKATKTILLQ KPDSAKAFDS FLEKRKPAQA IASPLSTREE  540
LVGVSSKKPE DNVAINGNLD VPSVGQNVNN QTPSDSSANG IPSTSEQDDW SAIQERALVQ  600
ALKTFPKETS QRWERVAAAI PGKTVNQCKK KFTSMKESFR NKKNAA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	331	354	KRRKEEEEKRAAQVAQQQKKVKEK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11450.1	0.0	MYB family protein