PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022923068.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

HD-ZIP

Protein Properties

Length: 274aa MW: 31998.3 Da PI: 7.9748

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022923068.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.3	1.4e-19	56	109	4	56
-SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++f++eq++ Le+ F++ +++++ +++ +LA++lgL+ rq+ +WFqNrRa++k XP_022923068.1 56 KRRFSDEQIRSLESIFYSsDSKLDSRKKVQLATELGLQPRQIAIWFQNRRARWK 109 578************98********************************9 PP
2	HD-ZIP_I/II	113.8	1.1e-36	55	147	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +krr+s+eq+++LE+ F +++ kL++++Kv+la+eLglqprq+a+WFqnrRAR+k+k++E+++++L+++yd+l+++ ++L++e+++L ++l++ XP_022923068.1 55 NKRRFSDEQIRSLESIFYSSDsKLDSRKKVQLATELGLQPRQIAIWFQNRRARWKSKEMENNFRSLRANYDNLASQFKTLQEEKNSLLSQLQK 147 69*************88777******************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence
MDWKKPHENE WTKVMEREEY FILPNFETAA VASSQTCSTP RRRRRRRKKK TNNMNKRRFS 60 DEQIRSLESI FYSSDSKLDS RKKVQLATEL GLQPRQIAIW FQNRRARWKS KEMENNFRSL 120 RANYDNLASQ FKTLQEEKNS LLSQLQKLSE LVHEGPREGH YSNEIAETIY ETKEKPQSFH 180 DELGQNGVTY LNNNYNTDKR GTENGEGDRG LEMTHSSEGR SNDRSHAVEK ACQLLNPNGS 240 FESSENWCGF DSDGGGIIFE YQPCSSLQEL SFWG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	41	46	RRRRRR
2	41	47	RRRRRRR
3	41	49	RRRRRRRKK
4	41	58	RRRRRRRKKKTNNMNKRR
5	42	47	RRRRRR
6	42	48	RRRRRRR
7	42	50	RRRRRRRKK
8	42	59	RRRRRRRKKKTNNMNKRR
9	43	49	RRRRRRR
10	43	60	RRRRRRRKKKTNNMNKRR
11	44	50	RRRRRRR
12	44	61	RRRRRRRKKKTNNMNKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.2	2e-31	HD-ZIP family protein